Tags : Browse Projects

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Fiji TrackMate

Analyzed 11 months ago

TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the goal is to segment and follow over time some labelled, spot-like structures. Each spot is segmented in multiple frames and its trajectory is reconstructed by assigning it an identity ... [More]

57.1K lines of code

4 current contributors

about 1 year since last commit

3 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Tags fiji imageanalysis imagej java lifescience microscopy particletracking

MOLGENIS model-driven database platform

M

Analyzed 11 months ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

484K lines of code

23 current contributors

about 1 year since last commit

1 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: No declared licenses

Tags bioinformatics biomedical crud database genetics java javascript lifescience online portal research

isa-api

I

Analyzed 11 months ago

The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ ... [More]

351K lines of code

4 current contributors

about 1 year since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in JavaScript

Tags annotation bioinformatics biology biomedical-data-standards data data_formats data_integration genomics json lifescience metabolomics metadata 5 more...

KEGG4J

K

Analyzed 11 months ago

Java Utils regarding the KEGG API

2.93K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics computationalbiology enzyme exome genome genomics java kegg lifescience metabolicpathways metabolism metabolomics 2 more...

HMDB4J

H

Analyzed 11 months ago

Java utils to parse and handle the http://www.hmdb.ca/downloads files

2.12K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags genome genomics lifescience metabolic metabolomics

FASTA4J

F

Analyzed 11 months ago

FASTA file format utils

1K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics exome fasta genetics genome genomics lifescience sequencing

UniProt4J

U

Analyzed 11 months ago

Utils for the REST API of http://www.uniprot.org

1.98K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics biology exome genes human java lifescience proteomics scientific uniprot

Sider4J

S

Analyzed 11 months ago

Java utils for the sider http://sideeffects.embl.de/ database files

537 lines of code

0 current contributors

about 7 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags drugs effects lifescience metabolites side sider

VCF4J

V

Analyzed 11 months ago

Java utils for parsing the variant call format

1.72K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics call exome format genome lifescience sequencing variant variant_calling vcf

BioFSharp

Analyzed 11 months ago

F# is interactive, functional language with fast run time. Here we provide tools sets for bioinformatics.

17.6K lines of code

11 current contributors

over 4 years since last commit

0 users on Open Hub

Activity Not Available

I Use This

Mostly written in F#

Tags bioinformatic fsharp lifescience