Projects tagged ‘microscopy’

Bio-Formats

Analyzed 11 months ago

Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.

196K lines of code

18 current contributors

12 months since last commit

8 users on Open Hub

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Mostly written in Java

Licenses: BSD-2-Clause, gpl

GoFigure 2

Analyzed 11 months ago

The prime goal of GoFigure 2 is the automatic segmentation of nuclei and cell membranes and in temporally tracking them amidst cell division to create lineages.

238K lines of code

0 current contributors

almost 11 years since last commit

3 users on Open Hub

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Mostly written in C++

Licenses: bsd

Tags boost c++ cross-platform imageanalysis insighttoolkit microscopy mysql segmentation tracking visualization vtk

Fiji TrackMate

Analyzed 11 months ago

TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the goal is to segment and follow over time some labelled, spot-like structures. Each spot is segmented in multiple frames and its trajectory is reconstructed by assigning it an identity ... [More]

57.1K lines of code

4 current contributors

about 1 year since last commit

3 users on Open Hub

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Mostly written in Java

Licenses: gpl

Tags fiji imageanalysis imagej java lifescience microscopy particletracking

Huygens Remote Manager (HRM)

Analyzed 11 months ago

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.

262K lines of code

6 current contributors

12 months since last commit

1 users on Open Hub

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Mostly written in JavaScript

Licenses: cecill-v2_1

Tags deconvolution imageanalysis imageprocessing microscopy php server_side serverside webinterface

AutoTx

Analyzed 11 months ago

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

3.87K lines of code

0 current contributors

over 6 years since last commit

1 users on Open Hub

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Mostly written in C#

Licenses: gpl3

Tags background backgroundtransfer csharp dotnet microscopy nlog robocopy robosharp service transfer trayicon windows

Endrov

Analyzed 11 months ago

Endrov is an open-source plugin architecture aimed for image analysis and data processing. Being based on Java, it is portable and can both be run locally and as an applet. It was designed to overcome the lack of support for spatio-temporal image data in common applications, and has since grown to ... [More]

227K lines of code

0 current contributors

about 11 years since last commit

1 users on Open Hub

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Mostly written in Java

Licenses: BSD-3-Clause

Tags cross-platform database imageacquisition imageanalysis imageprocessing java jinput jogl microscopy opengl swing visualization

EBSD-Image

No analysis available

EBSD-Image is a free open-source software to analyze EBSD diffraction patterns and mappings. It is built on top of RML-Image, an image analysis freeware. It therefore combines image analysis routines and tools specific to EBSD such as an engine capable of analyzing EBSD diffraction patterns. It is ... [More]

0 lines of code

0 current contributors

0 since last commit

1 users on Open Hub

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