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This package is a generic implementation of a method for producing spreadsheets out of pipeline graph. It is based on the computation of the minimum flow from all the sources to all the sink nodes, having set at 1 the lower bound for all the experimental workflow arcs (and no upper bound, i.e. ... [More] capacity) restrictions. A more detailed explanation of such algorithm will be added here soon. Start from graph2tab_intro.pdf for a detailed description on how to use the package. Have a look at MinFlowCalculator, FlowInitialiser, LayersBuilder, TableBuilder if you are interested in implementation details. [Less]

The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ ... [More] (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable. To find out more about ISA, see www.isa-tools.org [Less]