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Exome Variant Analysis

No analysis available

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress ... [More]

0 lines of code

0 current contributors

0 since last commit

1 users on Open Hub

Activity Not Available

I Use This

Mostly written in language not available

Licenses: ccbysa3-0, lgpv3_or_...

Tags annovar bioconductor bio_informatics bioinformatics clustercomputing exome indel pipeline r sequencing snowfall snp 3 more...

KEGG4J

K

Analyzed 27 days ago

Java Utils regarding the KEGG API

2.93K lines of code

0 current contributors

about 4 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics computationalbiology enzyme exome genome genomics java kegg lifescience metabolicpathways metabolism metabolomics 2 more...

FASTA4J

F

Analyzed 27 days ago

FASTA file format utils

1K lines of code

0 current contributors

about 4 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics exome fasta genetics genome genomics lifescience sequencing

UniProt4J

U

Analyzed 26 days ago

Utils for the REST API of http://www.uniprot.org

1.98K lines of code

0 current contributors

about 4 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics biology exome genes human java lifescience proteomics scientific uniprot

FASTQ4J

F

Analyzed 27 days ago

FASTQ4J file format Java Utils

416 lines of code

0 current contributors

about 4 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics exome fastq fq genome genomics sequencing

VCF4J

V

Analyzed 26 days ago

Java utils for parsing the variant call format

1.72K lines of code

0 current contributors

over 3 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags bioinformatics call exome format genome lifescience sequencing variant variant_calling vcf