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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 98 of 100 Search / Filter on:
add fasta formatter and script to plot histogram, and add to the PE qc script	tanghaibao as Haibao Tang	More...				almost 14 years ago
add orientation listings for paired-end summary	tanghaibao as Haibao Tang	More...				almost 14 years ago
fastq unpair	tanghaibao as Haibao Tang	More...				almost 14 years ago
sometimes the castab will contain readname with spaces. use reverse column indexing in cas.py	tanghaibao as Haibao Tang	More...				almost 14 years ago
add script to visualize and validate scaffolding	tanghaibao as Haibao Tang	More...				almost 14 years ago
refactor sizes into a separate file	tanghaibao as Haibao Tang	More...				almost 14 years ago
modify blastplot and test run	tanghaibao as Haibao Tang	More...				almost 14 years ago
add blastplot	tanghaibao as Haibao Tang	More...				almost 14 years ago
add paired-end statistics to blast.py and castab.py; merge cas and castab	tanghaibao as Haibao Tang	More...				almost 14 years ago
make the iterator version of blast parsing default	tanghaibao as Haibao Tang	More...				almost 14 years ago
add blast best hit iterator	tanghaibao as Haibao Tang	More...				almost 14 years ago
add reverse complement for fasta diff	tanghaibao as Haibao Tang	More...				almost 14 years ago
add entrez bisect	tanghaibao as Haibao Tang	More...				almost 14 years ago
add fasta diff	tanghaibao as Haibao Tang	More...				almost 14 years ago
add more fasta routines related to handle couple seq and qual	tanghaibao as Haibao Tang	More...				almost 14 years ago
handle fasta qual trimming	tanghaibao as Haibao Tang	More...				almost 14 years ago
add sybase lib	tanghaibao as Haibao Tang	More...				about 14 years ago
add fasta/fastq stats utilities	tanghaibao as Haibao Tang	More...				about 14 years ago
add fasta vector trimming through cross_match	tanghaibao as Haibao Tang	More...				about 14 years ago
add fastq low complexity removal	tanghaibao as Haibao Tang	More...				about 14 years ago
fix fastq pairing	tanghaibao as Haibao Tang	More...				about 14 years ago
pair up fastq files and produce fragments and pairs	tanghaibao as Haibao Tang	More...				about 14 years ago
some useful recipes, print stats for softlinks	tanghaibao as Haibao Tang	More...				about 14 years ago
add grid run generic command	tanghaibao as Haibao Tang	More...				about 14 years ago
add cas split (using clcbio sub_assembly)	tanghaibao as Haibao Tang	More...				about 14 years ago
add btab parser	tanghaibao as Haibao Tang	More...				about 14 years ago
modify dotplot to color the dots based on external values (like ks)	tanghaibao as Haibao Tang	More...				about 14 years ago
add dotplot.py	tanghaibao as Haibao Tang	More...				about 14 years ago
softlink	tanghaibao as Haibao Tang	More...				about 14 years ago
add softlinks, touch and cp functionalities to transfer the links	tanghaibao as Haibao Tang	More...				about 14 years ago

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