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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 95 of 100 Search / Filter on:
fix bug in agp.summary() because of skipping "centromere"	tanghaibao as Haibao Tang	More...				over 13 years ago
fix A50 => calculate_A50 in agp.gaps()	tanghaibao as Haibao Tang	More...				over 13 years ago
manipulate libname in prepareCA.fastq(), minor change	tanghaibao as Haibao Tang	More...				over 13 years ago
fix function name for A50; modification to prepareCA.fastq()	tanghaibao as Haibao Tang	More...				over 13 years ago
add fastq.pairinplace(); add --tag for fastq.unpair()	tanghaibao as Haibao Tang	More...				over 13 years ago
add fastq.splitread; move prepareCA.trim to fastq.trim	tanghaibao as Haibao Tang	More...				over 13 years ago
Merge branch 'master' of git://github.com/tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				over 13 years ago
add scaffold component analysis in formats.posmap	tanghaibao as Haibao Tang	More...				over 13 years ago
add bed sort; add posmap to bed; fix bug in prepareCA.fasta	tanghaibao as Haibao Tang	More...				over 13 years ago
Fix broken lpsolve due to sh() change, other misc changes	tanghaibao as Haibao Tang	More...				over 13 years ago
Merge branch 'master' of git://github.com/tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				over 13 years ago
Pet peeves: modify scripts according to PEP8 until: $ find . -name "*.py" \| xargs pep8 -r --statistics returns 13 E501 errors that remain un-fixed	tanghaibao as Haibao Tang	More...				over 13 years ago
Merge branch 'master' of git://github.com/tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				over 13 years ago
Pet peeves: fix subset of PEP8 concerning whitespaces	tanghaibao as Haibao Tang	More...				over 13 years ago
minor edits in README	tanghaibao as Haibao Tang	More...				over 13 years ago
add chromosome base scale bar	tanghaibao as Haibao Tang	More...				over 13 years ago
Merge branch 'master' of git://github.com/tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				over 13 years ago
add tabulate() in utils.cbook and doctest	tanghaibao as Haibao Tang	More...				over 13 years ago
Merge branch 'master' of git://github.com/tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				over 13 years ago
add plotting script to show regions on a chromosome	tanghaibao as Haibao Tang	More...				over 13 years ago
given a contig graph, determine contig orientations	tanghaibao as Haibao Tang	More...				over 13 years ago
add range_intersect, add matrix symmetrize and misc modifications in bundle	tanghaibao as Haibao Tang	More...				over 13 years ago
add contig mate validation algorithm	tanghaibao as Haibao Tang	More...				over 13 years ago
estimate insert size cutoff in blast.pairs	tanghaibao as Haibao Tang	More...				over 13 years ago
start the contig edge bundling algorithm	tanghaibao as Haibao Tang	More...				over 13 years ago
unify the command line call through sh, whether in terminal, or on grid	tanghaibao as Haibao Tang	More...				over 13 years ago
wraps bwa command line to allow grid submission; modify grid submission stdout	tanghaibao as Haibao Tang	More...				over 13 years ago
add log when converting read names	tanghaibao as Haibao Tang	More...				over 13 years ago
allow sh to run on grid	tanghaibao as Haibao Tang	More...				over 13 years ago
add more reporting to apps.gbsubmit	tanghaibao as Haibao Tang	More...				over 13 years ago

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