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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 97 of 100 Search / Filter on:
Merge branch 'master' of github.com:tanghaibao/jcvi	tanghaibao as Haibao Tang	More...				almost 14 years ago
add assembly folder and script to convert fasta files to frg files	tanghaibao as Haibao Tang	More...				almost 14 years ago
minor update on the debugging message	tanghaibao as Haibao Tang	More...				almost 14 years ago
simplify blastfilter	tanghaibao as Haibao Tang	More...				almost 14 years ago
add algorithms.graph	tanghaibao as Haibao Tang	More...				almost 14 years ago
add overlap decision in coords	tanghaibao as Haibao Tang	More...				almost 14 years ago
minor fix to correct points data structure in synteny	tanghaibao as Haibao Tang	More...				almost 14 years ago
add range_conflict	tanghaibao as Haibao Tang	More...				almost 14 years ago
add fasta gap size calculation; add agp chr0 option to build ungapped scaffolds	tanghaibao as Haibao Tang	More...				almost 14 years ago
add fasta gap size report	tanghaibao as Haibao Tang	More...				almost 14 years ago
add version strip options in entrez.fetch and agp.accessions	tanghaibao as Haibao Tang	More...				almost 14 years ago
add sequin submission and agp summary	tanghaibao as Haibao Tang	More...				almost 14 years ago
add agp summary	tanghaibao as Haibao Tang	More...				almost 14 years ago
add agp utility - build chr0, list accessions, and get BAC phases	tanghaibao as Haibao Tang	More...				almost 14 years ago
add options to merge gaps in agp	tanghaibao as Haibao Tang	More...				almost 14 years ago
add agp __str__ method()	tanghaibao as Haibao Tang	More...				almost 14 years ago
add agp print header	tanghaibao as Haibao Tang	More...				almost 14 years ago
move posmap to formats folder	tanghaibao as Haibao Tang	More...				almost 14 years ago
add line plot to blastplot	tanghaibao as Haibao Tang	More...				almost 14 years ago
implement shortest/longest path solver using linear programming	tanghaibao as Haibao Tang	More...				almost 14 years ago
add lpsolve from quota-align package and modify to local convention	tanghaibao as Haibao Tang	More...				almost 14 years ago
add posmap pairs	tanghaibao as Haibao Tang	More...				almost 14 years ago
swap sstart, send if strand of query and subject is not the same	tanghaibao as Haibao Tang	More...				almost 14 years ago
fasta extract can take in strand	tanghaibao as Haibao Tang	More...				almost 14 years ago
add script to streamline sam indexing	tanghaibao as Haibao Tang	More...				almost 14 years ago
add Astat calculator	tanghaibao as Haibao Tang	More...				almost 14 years ago
textwrap.fill is slow, write a specific fill function in utils.misc	tanghaibao as Haibao Tang	More...				almost 14 years ago
add sam to ace converter	tanghaibao as Haibao Tang	More...				almost 14 years ago
init scaffoldQC module and add posmap parsing script	tanghaibao as Haibao Tang	More...				almost 14 years ago
make histogram in PE report default	tanghaibao as Haibao Tang	More...				almost 14 years ago

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