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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 93 of 100 Search / Filter on:
jcvi/apps/entrez modified to add new download formats(rettype) and include new command line option to choose search database	vivekkrish as Vivek Krishnakumar	More...				over 13 years ago
normalize gap sizes in fasta.tidy()	tanghaibao as Haibao Tang	More...				over 13 years ago
add fasta.ids() and fasta.tidy()	tanghaibao as Haibao Tang	More...				over 13 years ago
add blat filter to vecscreen and inplace bed sort	tanghaibao as Haibao Tang	More...				over 13 years ago
add custom database option and blat option in screening contaminants	tanghaibao as Haibao Tang	More...				over 13 years ago
rename tabular() to banner() and move to utils.table	tanghaibao as Haibao Tang	More...				over 13 years ago
add a generic file reader must_open()	tanghaibao as Haibao Tang	More...				over 13 years ago
add method to swap query and subject from a blastfile	tanghaibao as Haibao Tang	More...				over 13 years ago
minor change for sbt	tanghaibao as Haibao Tang	More...				over 13 years ago
make sbt template directly from list of authors	tanghaibao as Haibao Tang	More...				over 13 years ago
check infile is newer than outfile in depends() decorator	tanghaibao as Haibao Tang	More...				over 13 years ago
add vecscreen app; add range_merge() to merge close-by intervals; rename decorator check_dependency() => depends()	tanghaibao as Haibao Tang	More...				over 13 years ago
add decorator to check dependency of function calls; add download()	tanghaibao as Haibao Tang	More...				over 13 years ago
add base.n50()	tanghaibao as Haibao Tang	More...				over 13 years ago
better unitig.error() and unitig.trace() implementations	tanghaibao as Haibao Tang	More...				over 13 years ago
add function to generate gatekeeper edit script from classifyMates results	tanghaibao as Haibao Tang	More...				over 13 years ago
add transpose option to tabulate	tanghaibao as Haibao Tang	More...				over 13 years ago
make fastq.unpair operate on a set of files	tanghaibao as Haibao Tang	More...				over 13 years ago
add agp.stats to report component spans and gap spans in a summary table, alert if component span less than 50 bases	tanghaibao as Haibao Tang	More...				over 13 years ago
add agp trim components of dangling gaps, add agp.tidy for streamline agp cleanup	tanghaibao as Haibao Tang	More...				over 13 years ago
add TextCircle	tanghaibao as Haibao Tang	More...				over 13 years ago
add boilerplate generation for graphic scripts	tanghaibao as Haibao Tang	More...				over 13 years ago
rename chromosome drawing function names	tanghaibao as Haibao Tang	More...				over 13 years ago
fix L50/N50 mixup; report more details about a bed	tanghaibao as Haibao Tang	More...				over 13 years ago
add -t threadings to bwa wrapper	tanghaibao as Haibao Tang	More...				over 13 years ago
add gmap -> sim4db refinement script generation	tanghaibao as Haibao Tang	More...				over 13 years ago
add paired distance report for interleaved read mapping	tanghaibao as Haibao Tang	More...				over 13 years ago
move tabulate function to utils.table	tanghaibao as Haibao Tang	More...				over 13 years ago
unitig shred first unitig keeps the same unitig id	tanghaibao as Haibao Tang	More...				over 13 years ago
add unitig shred as last resort to fix unitigs	tanghaibao as Haibao Tang	More...				over 13 years ago

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