Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source
... [More] code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists. [Less]
Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress
... [More] that is being used already for production in some research centers.
Features:
* Quality Control
* Mapping in a reference genome
* Tasks related to variants:
** Calling
** Filtering
** Annotating
** Reporting effects and basic statistics
* Sending an email once the run is finished.
More information: ueb(a)vhir.org [Less]
A tool to perform Genome-Wide Association Studies written in Java. It is primarily meant to be used on desktop machines through its GUI (alternatively via scripts).
This site uses cookies to give you the best possible experience.
By using the site, you consent to our use of cookies.
For more information, please see our
Privacy Policy