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  • electrophysiology (20)

    Chaste

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      Analyzed 29 days ago

    Chaste - Cancer Heart And Soft Tissue Environment Chaste is a computational biology simulation package. It provides a cardiac simulation package which provides a way to use CellML electrophysiology models in tissue simulations. The cardiac code is suitable for high performance computing on large ... [More] supercomputers. The cell-based side of the code provides a variety of agent-based models (cellular automata, cell-centre-based (on and off mesh), cell vertex, cellular Potts models) for use in biological settings where cells divide and die according to other models. For details please see the recent overview paper in PLoS Computational Biology www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002970 [Less]

    458K lines of code

    9 current contributors

    2 months since last commit

    3 users on Open Hub

    Moderate Activity
    5.0
     
    0 Reviews
    I Use This
    Mostly written in C++
    Licenses: BSD-3-Clause
    Tags biology cancer cardiac electrophysiology mathematical_model simulation soft-tissue vertex

    Functional Curation Web Interface

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      Analyzed 30 days ago

    Provides a user-friendly web interface to the Functional Curation system for evaluating and comparing mathematical models of biological systems under a range of experimental scenarios.

    102K lines of code

    0 current contributors

    almost 7 years since last commit

    2 users on Open Hub

    Inactive
    0.0
     
    0 Reviews
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    Mostly written in JavaScript
    Licenses: BSD-3-Clause
    Tags cardiac cellml electrophysiology mathematical_model simulation virtual_experiment

    OpenCOR

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      Analyzed 30 days ago

    OpenCOR is a cross-platform modelling environment which can be used to organise, edit, simulate and analyse CellML files.

    114K lines of code

    2 current contributors

    2 months since last commit

    2 users on Open Hub

    Moderate Activity
    5.0
     
    0 Reviews
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    Mostly written in C++
    Licenses: gpl3
    Tags cardiac cellml electrophysiology mathematical_model simulation

    libnix

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    Claimed by German Neuroinformatics Node Analyzed 29 days ago

    NIX: Neuroscience information exchange format The NIX project (previously called Pandora) started as an initiative of the Electrophysiology Task Force which is part of the INCF Datasharing Program. As such the project aims to develop standardized methods and models for storing electrophysiology ... [More] and other neuroscience data together with their metadata in one common file format based on HDF5. [Less]

    29.1K lines of code

    4 current contributors

    about 2 years since last commit

    2 users on Open Hub

    Inactive
    5.0
     
    0 Reviews
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    Mostly written in C++
    Licenses: BSD-4-Clause
    Tags data electrophysiology hdf5 neuroscience

    nixpy

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    Claimed by German Neuroinformatics Node Analyzed 29 days ago

    Python bindings for the NIX library

    13.3K lines of code

    6 current contributors

    5 months since last commit

    1 users on Open Hub

    Very Low Activity
    5.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: BSD-4-Clause
    Tags data electrophysiology hdf5 metadata neuroscience

    NeuralEnsemble-Elephant

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      Analyzed 30 days ago

    Elephant is the ElectroPhysiology Analysis Toolkit

    27.7K lines of code

    11 current contributors

    3 months since last commit

    0 users on Open Hub

    Very Low Activity
    0.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: BSD-3-Clause
    Tags dataanalysis electrophysiology neuroscience Python timeseries

    NeuralEnsemble:Neo

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      Analyzed 29 days ago

    Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats.

    44.5K lines of code

    19 current contributors

    2 months since last commit

    0 users on Open Hub

    High Activity
    0.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: BSD-3-Clause
    Tags electrophysiology neuroscience numpy

    ApPredict Web Portal

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      Analyzed 30 days ago

    Collection of components which provide a web interface to cardiac action potential prediction under blockade of cardiac ion channels.

    183K lines of code

    3 current contributors

    almost 2 years since last commit

    0 users on Open Hub

    Very Low Activity
    0.0
     
    0 Reviews
    I Use This
    Mostly written in Java
    Licenses: BSD-3-Clause
    Tags cardiac electrophysiology portal simulation web

    ApPredict

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      No analysis available

    ApPredict is a free open source program for prediction of action potential changes under drug-block of ion channels. The ion channel block is modelled as conductance block, and it can be used with a number of action potential models (specified using CellML), different pacing rates. Blockade of ... [More] the following ion channels can be included: IKr (hERG), IKs (KCNQ1), ICaL (CaV1.2), INa (NaV1.5), Ito (Kv4.3), IK1 (KCNN4). [Less]

    0 lines of code

    1 current contributors

    0 since last commit

    0 users on Open Hub

    Activity Not Available
    0.0
     
    0 Reviews
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    Mostly written in language not available
    Licenses: BSD-3-Clause
    Tags cardiac compound drug electrophysiology simulation

    CESE

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      Analyzed 29 days ago

    Cell Electrophysiology Simulation Environment (CESE)

    58.4K lines of code

    0 current contributors

    over 15 years since last commit

    0 users on Open Hub

    Inactive
    0.0
     
    0 Reviews
    I Use This
    Mostly written in Java
    Licenses: No declared licenses
    Tags electrophysiology heart neuron