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Analyzed about 1 year ago. based on code collected about 1 year ago.
Jan 18, 2023 — Jan 18, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
[utils] Check if sep is None
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Add AL50 in AlignStats
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Add --both in blast.bed()
tanghaibao
as Haibao Tang
More... about 6 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
tanghaibao
as Haibao Tang
More... about 6 years ago
[graphics] Expose usetex in setup_theme()
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Add --strict in blast.summary()
tanghaibao
as Haibao Tang
More... about 6 years ago
[graphics] Do not set tex on Darwin
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Do not report identity on alignlen in blast.summary()
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Add --tabular in blast.summary()
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Refactor coords.print_stats() into blast.AlignStats
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Also report span in blast.summary()
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Add blast.gaps()
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Flip qstart and qstop if inverted in pyblast
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Fix blast.chain() when field len <= 10
tanghaibao
as Haibao Tang
More... about 6 years ago
[formats] Separate pyblast.BlastLine from formats.blast
tanghaibao
as Haibao Tang
More... about 6 years ago
[apps] Add align.lastgenome()
tanghaibao
as Haibao Tang
More... about 6 years ago
[assembly] Update hic.simulate()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add age.ccn()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add age.regression()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add age.correlation()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add MeanCoverage in age.qc()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add age.qc()
tanghaibao
as Haibao Tang
More... over 6 years ago
[age] Add filter_new_values()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Pass filenames into age.heritability()
tanghaibao
as Haibao Tang
More... over 6 years ago
[projects] Add age.heritability()
tanghaibao
as Haibao Tang
More... over 6 years ago
[hic] Flip origin to be 'upper'
tanghaibao
as Haibao Tang
More... over 6 years ago
[assembly] Add --nobreaks in hic
tanghaibao
as Haibao Tang
More... over 6 years ago
[assembly] Use resolution info from genome.json if available
tanghaibao
as Haibao Tang
More... over 6 years ago
[graphics] Set logging.CRITICAL when importing matplotlib
tanghaibao
as Haibao Tang
More... over 6 years ago
[utils] Update aws spec
tanghaibao
as Haibao Tang
More... over 6 years ago