| [projects] str.allelefreqall() now handles AR locus |
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over 6 years ago
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| [projects] Add str.allelefreqall() |
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over 6 years ago
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| Merge branch 'master' of github.com:tanghaibao/jcvi |
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over 6 years ago
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| [utils] Do not quit after aws.role() |
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over 6 years ago
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| [variation] Allow multiple input files in cnv.summarycanvas() |
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over 6 years ago
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| [utils] Fix relative path in aws.ls_s3() |
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over 6 years ago
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| [utils] Implement recursive in ls_s3() |
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over 6 years ago
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| [assembly] Add --chr in hic.heatmap() |
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almost 7 years ago
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| [assembly] Also measures dists in hic.bam2mat() |
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almost 7 years ago
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| [assembly] Increase contrast in hic.heatmap() |
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almost 7 years ago
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| [assembly] Implement hic.heatmap() |
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almost 7 years ago
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| [assembly] Add hic.mergemat() |
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almost 7 years ago
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| [assembly] Add hic.heatmap() |
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almost 7 years ago
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| [assembly] Reformat assembly.hic |
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almost 7 years ago
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| [variation] Add cnv.summarycanvas() |
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almost 7 years ago
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| [apps] Add bwa.batch() |
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almost 7 years ago
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| [version] Update to version v0.8.4 |
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almost 7 years ago
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| [variation] Update latex symbols in title in cnv.gcdepth() |
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almost 7 years ago
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| [variation] Plot MAD band in cnv.gcdepth() |
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almost 7 years ago
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| [variation] Plot GC vs depth using mosdepth |
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almost 7 years ago
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| [utils] Check if session token expires in aws |
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almost 7 years ago
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| [annotation] Set max cpus for seqclean to 16 in pasa.assemble()) [apps] Allow specifying extra parameters for grid via --extra="PARAMS" [assembly] Process reads in paired mode (separate .1 and .2 fq files) when estimating insert size via automaton.pairs() [assembly] Enable full `--cleanup` param in trinity.prepare() |
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almost 7 years ago
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| [utils] Update instance.json |
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almost 7 years ago
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| Merge remote-tracking branch 'origin/master' into master-add-tests |
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almost 7 years ago
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| [assembly] + Update trinity.prepare() to support trinityrnaseq-v2.6.6 + Add ability to use HpcGridRunner with Trinity |
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almost 7 years ago
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| [annotation] + Add PASA_HOME when prepareing run.sh script in pasa.assemble() + Fix OptionParser docs for train.augustus() |
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almost 7 years ago
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| [formats] + Strip leading '@' when parsing FastqHeader + Choose appropriate parent ftype in gff.chain() + Handle filename suffix appropriately in blast.bed() + Allow AGP file streaming using formats.base.must_open() |
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almost 7 years ago
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| [assembly] Add new validation criteria in patch.bambus() [assembly] Prefix directory names to fastq files in preprocess.trim() |
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almost 7 years ago
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| [assembly] Fix issue #83 (thanks @StefanoLonardi) - plot PDF for singles |
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almost 7 years ago
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| [assembly] Add kmer.entropy() |
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almost 7 years ago
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