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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 20, 2023 — Jan 20, 2024 Showing page 6 of 485 Search / Filter on:
Merge pull request #1480 from broadinstitute/rhl_farm_wrong_ambig_code_star_allele	Ron Levine	More...				over 8 years ago
Merge pull request #1481 from broadinstitute/db_backport_qual	David Benjamin	More...				over 8 years ago
Replace SAMFileReader with calls to SamReaderFactory	Ron Levine	More...				over 8 years ago
Merge pull request #1478 from broadinstitute/rhl_htsjdk_2.6.1_picard_2.6.0	Ron Levine	More...				over 8 years ago
Merge pull request #1470 from broadinstitute/rhl_rm_nonref_genotypegvcfs	Ron Levine	More...				over 8 years ago
Move htsjdk to ver 2.6.1 and picard to ver 2.6.0	Ron Levine	More...				over 8 years ago
Fix 1448 to make alt allele removal by likelihoods robust to ref allele indices (#1475)	Steve Huang	More...				over 8 years ago
Assign correct ambiguity code for * allele	Ron Levine	More...				over 8 years ago
Merge pull request #1469 from broadinstitute/rhl_upgrade_apache_collections_to_v3.2.2	Ron Levine	More...				over 8 years ago
Merge pull request #1471 from broadinstitute/rhl_rm_gvcf_blocks_genotype_gvcf	Ron Levine	More...				over 8 years ago
Do not emit GVCF block definitions in the header	Ron Levine	More...				over 8 years ago
Merge pull request #1467 from broadinstitute/rhl_fix_rprst_is_usable	Ron Levine	More...				over 8 years ago
Remove NON_REF from allSites VCF output	Ron Levine	More...				over 8 years ago
Upgrade Apache Commons Collections to version 3.2.2	Ron Levine	More...				over 8 years ago
fix 1430 for genotype filters; refactored filter() method; added unit and integration test; more comprehensive fix must be done first on htsjdk side in JEXLMap (#1456)	Steve Huang	More...				over 8 years ago
Make ReadPosRankSumTest.isUsableRead() account for deletions	Ron Levine	More...				over 8 years ago
Merge pull request #1463 from broadinstitute/db_m2	David Benjamin	More...				over 8 years ago
Merge pull request #1454 from broadinstitute/rrhl_rm_stand_emit_conf	Ron Levine	More...				over 8 years ago
Merge pull request #1462 from broadinstitute/ts_m2_refactor	Takuto Sato	More...				over 8 years ago
Backport new AFCalculator	David Benjamin	More...				over 8 years ago
Cleaned up SomaticGenotypingEngine::callMutations and added some TODOs.	Takuto Sato	More...				over 8 years ago
More small refactorings of Mutect2 code	David Benjamin	More...				over 8 years ago
Merge pull request #1453 from broadinstitute/db_mutect2	David Benjamin	More...				over 8 years ago
Merge pull request #1460 from broadinstitute/rhl_rank_sum_test_del_return	Ron Levine	More...				over 8 years ago
Make getElementForRead() in RankSumTest robust	Ron Levine	More...				over 8 years ago
Merge pull request #1445 from broadinstitute/rhl_read_pos_span_del	Ron Levine	More...				over 8 years ago
Merge pull request #1452 from broadinstitute/pf_excludeIntervalPadding	Peter Fan	More...				over 8 years ago
Remove -stand_emit_conf argument	Ron Levine	More...				over 8 years ago
Merge pull request #1441 from broadinstitute/rhl_printreads_bqsr_fail	Ron Levine	More...				over 8 years ago
Merge pull request #1451 from broadinstitute/sl_issue_1345_fix_2	samuelklee	More...				over 8 years ago

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