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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 20, 2023 — Jan 20, 2024 Showing page 4 of 485 Search / Filter on:
Set AD and DP to zero if no read coverage	Ron Levine	More...				about 8 years ago
Merge pull request #1550 from broadinstitute/rhl_fix_splitncigarreads_doc_1549	Ron Levine	More...				about 8 years ago
Change ALLOW_N_CIGARS to ALLOW_N_CIGAR_READS in doc	Ron Levine	More...				about 8 years ago
Merge pull request #1539 from broadinstitute/rhl_hc_disable_badmatefilter_1443	Ron Levine	More...				about 8 years ago
Merge pull request #1548 from broadinstitute/rhl_synchonize_upstream_del_1188	Ron Levine	More...				about 8 years ago
Make upstreamDeletionsLoc ThreadLocal	Ron Levine	More...				about 8 years ago
Merge pull request #1546 from broadinstitute/rhl_annot_warn_1540	Ron Levine	More...				about 8 years ago
Merge pull request #1544 from broadinstitute/rhl_thread_safety_1543	Ron Levine	More...				about 8 years ago
Synchronize modification/access to practicalAlleleCountForPloidy	Ron Levine	More...				about 8 years ago
Merge pull request #1542 from broadinstitute/rhl_update_stand_call_conf_doc_1538	Ron Levine	More...				about 8 years ago
Update stand_call_conf doc strings	Ron Levine	More...				about 8 years ago
Log annotation warning once if using multithreads	Ron Levine	More...				about 8 years ago
Allow disabling of BadMateFilter in HaplotypeCaller	Ron Levine	More...				about 8 years ago
Fixed ClippingOP.getNewAlignmentStartOffset() to handle N cases properly and added unit test	Ron Levine	More...				about 8 years ago
Update pom versions to mark the start of GATK 3.8 development	Geraldine Van der Auwera	More...				about 8 years ago
Update pom versions for the 3.7 release	Geraldine Van der Auwera	More...				about 8 years ago
Merge remote-tracking branch 'unstable/master'	Geraldine Van der Auwera	More...				about 8 years ago
Merge pull request #1533 from broadinstitute/lb_update_jexl_behavior	Geraldine Van der Auwera	More...				about 8 years ago
Move htsjdk to ver 2.8.1 and picard to ver 2.7.2	Ron Levine	More...				about 8 years ago
Merge pull request #1529 from broadinstitute/ms_fs	meganshand	More...				about 8 years ago
Merge pull request #1528 from broadinstitute/rhl_validate_vcf.gz	Ron Levine	More...				about 8 years ago
Merge pull request #1496 from broadinstitute/db_m2_downsampling	Geraldine Van der Auwera	More...				about 8 years ago
Merge pull request #1520 from broadinstitute/gvda_more_docfixes_for_3.7	Geraldine Van der Auwera	More...				about 8 years ago
Makes Fisher's exact test match R and GATK4	meganshand	More...				about 8 years ago
Output files with the vcf.gz extension are gzipped, containing .bcf not as an extension result in VCF"	Ron Levine	More...				about 8 years ago
Merge pull request #1527 from broadinstitute/rhl_vc_writer_factory_to_builder	Ron Levine	More...				about 8 years ago
Replace VariantContextWriterFactory with VariantContextWriterBuilder	Ron Levine	More...				about 8 years ago
Merge pull request #1522 from broadinstitute/rhl_sam_error_1427	Ron Levine	More...				about 8 years ago
Make exit system file type message generic	Ron Levine	More...				about 8 years ago
Merge pull request #1517 from broadinstitute/rhl_adapter_boundary_err_1406	David Benjamin	More...				about 8 years ago

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