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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 20, 2023 — Jan 20, 2024 Showing page 3 of 485 Search / Filter on:
Merge pull request #1576 from broadinstitute/ms_FS_bug	meganshand	More...				almost 8 years ago
addressed review comments	Samuel Friedman	More...				almost 8 years ago
Fixes rounding errors in FS using the same solution as R	meganshand	More...				almost 8 years ago
dont spam on NaNs	Samuel Friedman	More...				almost 8 years ago
small code cleanup	Samuel Friedman	More...				almost 8 years ago
minor bug fix in depth of coverage for partitioning by library + test (#1574)	skwalker	More...				almost 8 years ago
Merge pull request #1572 from broadinstitute/dr_use_gkl_intel_inflater_deflater	droazen	More...				almost 8 years ago
Use GKL's implementation of Vector Logless Pair HMM	Ernesto Brau	More...				almost 8 years ago
Add the Intel GKL as a dependency, and turn on the Intel inflater/deflater by default	David Roazen	More...				almost 8 years ago
Merge pull request #1571 from broadinstitute/rhl_vtbp_doc_1570	Ron Levine	More...				almost 8 years ago
Update PLINK link and change lines to columns	Ron Levine	More...				almost 8 years ago
Merge pull request #1569 from broadinstitute/rhl_vtt_doc_orders_samples_1545	Ron Levine	More...				almost 8 years ago
Merge pull request #1568 from broadinstitute/rhl_mutect2_doc_germline_1560	Ron Levine	More...				almost 8 years ago
Document how VTT orders samples in output table	Ron Levine	More...				almost 8 years ago
Update MuTect2 documentation about not computing obvious germline variants	Ron Levine	More...				almost 8 years ago
Merge pull request #1565 from broadinstitute/rhl_fix_cv_merge_1547	Ron Levine	More...				almost 8 years ago
Fix CombineVariants merge for different types	Ron Levine	More...				almost 8 years ago
Merge pull request #1563 from broadinstitute/rhl_fci_thresholds_1562	Ron Levine	More...				almost 8 years ago
Merge pull request #1535 from broadinstitute/rhl_clipping_op_align_offset_1447	Ron Levine	More...				almost 8 years ago
Fix FindCoveredIntervals so -minBQ, -minMQ and -cov work as expected	Ron Levine	More...				almost 8 years ago
Merge pull request #1551 from broadinstitute/rhl_hc_no_dp_ad_1322	Ron Levine	More...				almost 8 years ago
Merge pull request #1559 from broadinstitute/rhl_htsjdk_2.9.1_picard_2.9.0	Ron Levine	More...				almost 8 years ago
Move htsjdk to ver 2.9.1 and picard to ver 2.9.0	Ron Levine	More...				almost 8 years ago
Merge pull request #1553 from broadinstitute/rhl_latv_split_nocall_1518	Ron Levine	More...				almost 8 years ago
Merge pull request #1557 from broadinstitute/rhl_ggvcfs_input_prior_1532	Ron Levine	More...				almost 8 years ago
Total ploidy does not have to equal to the number of priors	Ron Levine	More...				almost 8 years ago
Merge pull request #1555 from broadinstitute/rhl_htsjdk_2.9.0_picard_2.8.3	Ron Levine	More...				almost 8 years ago
Remove unused compressed_block_size and close BlockCompressedInputStream	Ron Levine	More...				almost 8 years ago
Move htsjdk to ver 2.9.0 and picard to ver 2.8.3	Ron Levine	More...				almost 8 years ago
Fix LeftAlignAndTrimVariants -split to not change no-call genotypes to hom-ref	Ron Levine	More...				almost 8 years ago

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