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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 20, 2023 — Jan 20, 2024 Showing page 2 of 485 Search / Filter on:
Merge pull request #1604 from broadinstitute/rhl_close_printstream_1600	ldgauthier	More...				over 7 years ago
Close BQSRGatherer's PrintStream when finished	Ron Levine	More...				over 7 years ago
Merge pull request #1595 from broadinstitute/eba_gkl_pairhmm_fpga	droazen	More...				over 7 years ago
Deprecate --allowMissingData, add --errorIfMissingData and print NA for null object in VariantsToTable	Ron Levine	More...				over 7 years ago
Close BQSRGatherer's PrintStream when finished	Ron Levine	More...				over 7 years ago
Update all the md5s for header reference path changes	Laura Gauthier	More...				over 7 years ago
Close SamReader	Ron Levine	More...				over 7 years ago
Added FPGA support for PairHMM via GKL, and marked as 'experimental'	Ernesto Brau	More...				over 7 years ago
Move htsjdk to ver 2.10.0 and picard to ver 2.9.2	Ron Levine	More...				over 7 years ago
Copy Program Records (PG) from input BAM	Ron Levine	More...				over 7 years ago
Add assert to testMissingAlleleSpecificAnnotationGroup (#1587)	Ron Levine	More...				over 7 years ago
GenotypeGVCFs and CombineGVCFs should error when AS annotations are not present (#1585)	Ron Levine	More...				over 7 years ago
Merge pull request #1586 from broadinstitute/ldg_turnOffOneMoreTest	ldgauthier	More...				over 7 years ago
One more stupid fargo bam test to turn off	Laura Gauthier	More...				over 7 years ago
Merge pull request #1541 from broadinstitute/ldg_revertToMedianRankSum	ldgauthier	More...				over 7 years ago
Merge pull request #1582 from broadinstitute/SC-input-prior-HC-doc-fix	ldgauthier	More...				over 7 years ago
Change AC>1 to AC>0	Sheila Chandran	More...				over 7 years ago
Merge pull request #1575 from broadinstitute/snf_ReadGMMReport	Samuel Friedman	More...				over 7 years ago
respond to review comments	Samuel Friedman	More...				over 7 years ago
Normalize input data by same annotation normalization scheme as input model	Laura Gauthier	More...				over 7 years ago
add annotation mismatch warning and refactor tests	Samuel Friedman	More...				over 7 years ago
scientific notation in model report and basic test	Samuel Friedman	More...				over 7 years ago
Merge pull request #1581 from broadinstitute/ldg_actuallyFixTests	ldgauthier	More...				over 7 years ago
Turn off one more unit test with fargo bam	Laura Gauthier	More...				over 7 years ago
Merge pull request #1578 from broadinstitute/ldg_turnOffPicardAggregationTests	droazen	More...				over 7 years ago
expect floats in the report	Samuel Friedman	More...				over 7 years ago
Remove obsolete unmapped reads test for FindCoveredIntervals (#1580)	Ron Levine	More...				over 7 years ago
move model file parsing to initialize	Samuel Friedman	More...				almost 8 years ago
string cast bug	Samuel Friedman	More...				almost 8 years ago
Turn off PicardAggregation tests because they're a pain with all the bams moving to slow storage and because the pipeline utils aren't used anyway	Laura Gauthier	More...				almost 8 years ago

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