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Python Macromolecular Library (mmLib)
Analyzed 11 months ago
The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and provides
Licenses:
Artistic_...
Force Field X
Analyzed 11 months ago
Force Field X (FFX) is a group of open source (GPL v. 3 with Linking Exception), platform independent modules for molecular biophysics. Key methods include:
1) Atomic Multipole Optimized Energetics for Biomolecular Applications (AMOEBA) force fields
2) Particle-mesh Ewald (PME) electrostatics with
Licenses:
gpl_class...
mmdb
M
No analysis available
MMDB is a macromolecular coordinate library, written by Eugene Krissinel.
It supports reading and writing two file formats, PDB and mmCIF, and provides high-level tools for working with coordinate files: orthogonal-fractional coordinate transforms, generation of symmetry mates, editing the
Mostly written in language not available
Licenses:
lgpl3
relax (molecular dynamics analysis)
Analyzed 11 months ago
relax is a program designed for the study of molecular dynamics of organic molecules, proteins, RNA, DNA, sugars, and other biomolecules through the analysis of experimental NMR data. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE
Licenses:
gpl3_or_l...
ProDy
Analyzed 11 months ago
ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.
Fpocket
F
Analyzed 11 months ago
Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
Licenses:
No declared licenses
Miew - 3D Molecular Viewer
Claimed by EPAM Systems Analyzed 11 months ago
Miew is a high performance web tool for advanced visualization and manipulation of molecular structures.
Miew provides a full-featured set of tools for 3D visualization and editing of small molecules as well as large molecular complexes, including means to view, analyze, and modify the 3D
NucleicAcidSequenceTranslation4J
N
Analyzed 11 months ago
DNA/RNA translation utils
Licenses:
apache_2