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Commits : Listings

Analyzed about 1 year ago. based on code collected about 1 year ago.
Jan 18, 2023 — Jan 18, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Disable numexpr INFO logging (#478)
tanghaibao
as Haibao Tang
More... over 2 years ago
Plotting changes (#470)
tanghaibao
as Haibao Tang
More... over 2 years ago
Add vaf
tanghaibao
as Haibao Tang
More... almost 3 years ago
Add validate()
tanghaibao
as Haibao Tang
More... almost 3 years ago
Add closest()
tanghaibao
as Haibao Tang
More... almost 3 years ago
Add --append_attrib in gff.bed()
tanghaibao
as Haibao Tang
More... almost 3 years ago
Revert an unintended change in #457 (thanks @jguppy)
tanghaibao
as Haibao Tang
More... almost 3 years ago
Add --parent_key in gff.bed() (thanks @yanyew, #458) (#459)
tanghaibao
as Haibao Tang
More... almost 3 years ago
Fix issue when writing "FLIP" in tour (thanks @jguppy, #456) (#457)
tanghaibao
as Haibao Tang
More... almost 3 years ago
Pass weightsfile into plotall() called by path() (#455)
tanghaibao
as Haibao Tang
More... almost 3 years ago
Add option --keep-chrlabels (thanks @liufy11, #450) (#451)
tanghaibao
as Haibao Tang
More... almost 3 years ago
Fix string.letters (py2) → strings.ascii_letters (py3) (thanks @inspirewind, #437) (#439)
tanghaibao
as Haibao Tang
More... about 3 years ago
Support AGP version 2.1 (#435)
tanghaibao
as Haibao Tang
More... about 3 years ago
Add --no_dotplot option (thanks @obenno, #430) (#432)
tanghaibao
as Haibao Tang
More... about 3 years ago
Passing --notex into compara.catalog (thanks @obenno, #430) (#431)
tanghaibao
as Haibao Tang
More... about 3 years ago
Make subscripts in F1, F2, BCn (#426)
tanghaibao
as Haibao Tang
More... about 3 years ago
Fix bug in assembly.patch.refine() (#421, thanks @QingqingLiuaaa) (#424)
tanghaibao
as Haibao Tang
More... about 3 years ago
Simulation updates (#423)
tanghaibao
as Haibao Tang
More... about 3 years ago
Fix initializer in kmer.histogram (#419)
tanghaibao
as Haibao Tang
More... about 3 years ago
Update biomart.py (#417) More... about 3 years ago
Add option --genelabels to allow showing labels just for the given genes (thanks @Bioinformatics-rookie, #404) (#406)
tanghaibao
as Haibao Tang
More... over 3 years ago
Use op.basename when inferring blastfile prefix (#390)
tanghaibao
as Haibao Tang
More... over 3 years ago
Add leftalign|rightalign (thanks @yangqihang1230, #385) (#386)
tanghaibao
as Haibao Tang
More... over 3 years ago
Update to new OBO url in test (#383)
tanghaibao
as Haibao Tang
More... over 3 years ago
Remove condition for assign_color() in graphics.synteny (#382)
tanghaibao
as Haibao Tang
More... over 3 years ago
Clean up Python 2 compat imports (#381)
tanghaibao
as Haibao Tang
More... over 3 years ago
Run black and remove deprecated files (#380)
tanghaibao
as Haibao Tang
More... over 3 years ago
Add total downloads badge
tanghaibao
as Haibao Tang
More... almost 4 years ago
Sanitize display strings with latex() (#369)
tanghaibao
as Haibao Tang
More... almost 4 years ago
Integer division in agp.mask()
tanghaibao
as Haibao Tang
More... almost 4 years ago