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Analyzed 12 months ago. based on code collected 12 months ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 23 of 24 Search / Filter on:
change the version number	Heng Li	More...				over 13 years ago
Added the B type	Heng Li	More...				over 13 years ago
Clarify chaining of PG records	On behalf of Alec Wysoker	More...				almost 14 years ago
* Added FO and KS tags to @RG * Added the FZ alignment tag * Allow IUPAC code in MD * Clarify that IUPAC is allowed in SEQ * Clarify that the H SAM type stores a byte array in the Hex format * Added BAM tag type "B" * Other format changes and minor clarifications	Heng Li	More...				almost 14 years ago
Change various items	Heng Li	More...				almost 14 years ago
* Added CC/CP tags back * Clarify that lowercase tags are reserved for users	Heng Li	More...				almost 14 years ago
Spec changes due to samtools-0.1.13 (r926:134) release	Heng Li	More...				almost 14 years ago
Change PL/GL order and SP type	Heng Li	More...				almost 14 years ago
update the BCF spec	Heng Li	More...				almost 14 years ago
sorry. It is SP not ST	Heng Li	More...				about 14 years ago
added ST	Heng Li	More...				about 14 years ago
require the consistency between CIGAR and SEQ	Heng Li	More...				about 14 years ago
Added that when 0x4 is set, no assumptions can be made about CIGAR and MAPQ as well.	Heng Li	More...				about 14 years ago
explaining the meaning of the N CIGAT operation.	Heng Li	More...				about 14 years ago
* SAM-spec-r853. * drop the recommendation of non-overlapping primary segment * fixed a typo found by Gerton	Heng Li	More...				about 14 years ago
minor change to the BAM table	Heng Li	More...				about 14 years ago
* samspec-r849 * added @RG-PG * allow lowercase tags in header	Heng Li	More...				about 14 years ago
wiggle is 1-based	Heng Li	More...				about 14 years ago
More precise descriptions. More complete.	Heng Li	More...				about 14 years ago
copy-paste descriptions on indexing	Heng Li	More...				about 14 years ago
started to add BAM spec (unfinished)	Heng Li	More...				about 14 years ago
* sam-spec-r837 * added BQ tag * allow lowercase letters in tags * fixed a few bugs in regexp * give BAM CIGAR code	Heng Li	More...				about 14 years ago
use float for QUAL	Heng Li	More...				over 14 years ago
spec	Heng Li	More...				over 14 years ago
incorporating changes from Alec and Peter.	Heng Li	More...				over 14 years ago
drop string FLAG	Heng Li	More...				over 14 years ago
use "should" in section 2 and change the section title	Heng Li	More...				over 14 years ago
minor formatting change	Heng Li	More...				over 14 years ago
remove implict rules; more descriptions	Heng Li	More...				over 14 years ago
minor change	Heng Li	More...				over 14 years ago

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