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Analyzed 12 months ago. based on code collected 12 months ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 2 of 24 Search / Filter on:
fixed typo in Genotype encoding example (#685)	kew24	More...				about 2 years ago
Add SINGULAR to platform tags (PR #686)	Palak Sheth	More...				about 2 years ago
Rebuilt VCFv4.4 PDF	Daniel Cameron	More...				about 2 years ago
Removed DP definition from SV section as it's already defined in 1.6.1	Daniel Cameron	More...				about 2 years ago
Rephrased GT "separator" to "phasing indicator" as, since it's now a prefix, it's not technically a separator Removed the word "preceding" from phasing indicator definitions as it is the indicators the precede the alleles, not alleles preceding the indicators	Daniel Cameron	More...				about 2 years ago
Added full list of VCF 4.4 changes	Daniel Cameron	More...				about 2 years ago
Updated VCF 4.4 pdf to RC2	Daniel Cameron	More...				about 2 years ago
Updated VCF 4.4 PDF; added "Release Candidate 2" disclaimer text	Daniel Cameron	More...				about 2 years ago
#675 added cross-reference to ALT definition	Daniel Cameron	More...				about 2 years ago
Rephrased CNV advice to so as to not imply <DEL:TR> or <DUP:TR> should be used.	Daniel Cameron	More...				about 2 years ago
VCF tandem repeat support (#676)	Daniel Cameron	More...				about 2 years ago
Document int32_t SAM header length in CRAM header (PR #683)	James Bonfield	More...				about 2 years ago
Clarify that CRAM SAM header may be uncompressed (PR #682)	James Bonfield	More...				about 2 years ago
CRAM: document process for handling empty blocks (PR #681)	James Bonfield	More...				about 2 years ago
Updated VCFv4.4 draft pdf	Daniel Cameron	More...				about 2 years ago
#667 Add cross-reference for notation for interpretation of single breakends as breakpoint	Daniel Cameron	More...				about 2 years ago
Replaced 2013 sentence about GATK supporting BCF2 BGZF "in the near future" with an explicit requirement for implementations to support both BGZF encoded and raw BCF2 files. samtools/htsjdk#946	Daniel Cameron	More...				about 2 years ago
#672 fixed END definition for <INS> symbolic alleles - Updated rlen definition to match new END definition - Defining all headers used in the SV example (sv44.vcf) so converted to BCF works	Daniel Cameron	More...				about 2 years ago
Clarify SAM file encoding (ASCII, UTF-8 in designated fields) (#670)	John Marshall	More...				over 2 years ago
Merge branch 'master' of github.com:samtools/hts-specs	Daniel Cameron	More...				over 2 years ago
Incorporated @yfarjoun #421 into VCFv4.4 Added PSO field to remove traversal ambiguity Using preceding GT notation to match BCF Added BCF clarification what to do with the missing first allele GT separator Defined implicit GT separator based on the other separators Removed absolete definition of bundles #643	Daniel Cameron	More...				over 2 years ago
Update CRAM, SAM, and VCF PDFs	John Marshall	More...				over 2 years ago
Revert inadvertent file mode change [trivial]	John Marshall	More...				over 2 years ago
#642 recommended but not required meta-information structured header field order	Daniel Cameron	More...				over 2 years ago
#620 using actual example for example header line	Daniel Cameron	More...				over 2 years ago
#620 add changes to VCFv4.4	Daniel Cameron	More...				over 2 years ago
Clarify description of structured vs unstructured meta-information lines (#620)	John Marshall	More...				over 2 years ago
Clarified BCF should infer END from SVLEN	Daniel Cameron	More...				over 2 years ago
#663 backported BOM clarification to VCF4.3	Daniel Cameron	More...				over 2 years ago
Recommend always using the MM ? . encoding (PR #660)	James Bonfield	More...				over 2 years ago

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