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Commits
: Listings
Analyzed
12 months
ago. based on code collected
12 months
ago.
Jan 18, 2023 — Jan 18, 2024
Showing page 1 of 24
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Contributor
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Date
Add CIGAR =/X entry to version history appendix (PR #743)
John Marshall
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about 1 year ago
Revert inadvertent file mode change [trivial]
John Marshall
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about 1 year ago
Update CRAM, SAM, and VCF PDFs
John Marshall
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over 1 year ago
Refget version 2.0.0 bump (#479)
Andrew Yates
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over 1 year ago
#707 Clarified in change log that DPADJ, CNADJ and CICNADJ have been removed, not deprecated as their meaning was never unambiguous
Daniel Cameron
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over 1 year ago
Replaced deprecated DPADJ/CNADJ fields in example
Daniel Cameron
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over 1 year ago
Fix spurious errors in SAM test files
John Marshall
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over 1 year ago
Clarify that `@RG PI` values are integers
John Marshall
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over 1 year ago
Add CRAMcodecs.pdf to index.md
James Bonfield
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almost 2 years ago
Add formatted CRAMcodecs.pdf and update CRAMv3.pdf
James Bonfield
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almost 2 years ago
Our GitHub Action should ignore diff/*.pdf errors
John Marshall
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almost 2 years ago
Add a small introduction to CRAM pseudocode
James Bonfield
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almost 2 years ago
Rewrite the CRAM Base Substitution (BS) code explanation
James Bonfield
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almost 2 years ago
Spell out slice md5sums interaction with embedded references
James Bonfield
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almost 2 years ago
Set safe.directory within the container-based GH Action step
John Marshall
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almost 2 years ago
Remove use of lowercase hex in SAM aux "H" tag in test data (#694)
James Bonfield
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almost 2 years ago
Added CN changes to the VCF 4.4 changelist
Daniel Cameron
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almost 2 years ago
Updated VCF 4.4 PDF to release version
Daniel Cameron
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almost 2 years ago
Promoted VCF 4.4 out of draft status
Daniel Cameron
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almost 2 years ago
Fixed error in PSL example
Daniel Cameron
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almost 2 years ago
Vcf4.4 proofreading (#691)
daviesrob
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almost 2 years ago
Added copy number section with total CN and ASCN examples (#688)
Daniel Cameron
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almost 2 years ago
Fix typos (Crypt4GH)
Colin
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about 2 years ago
Fix typos (SAM tags and test data)
Colin
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about 2 years ago
Fix typos (CRAM)
Colin
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about 2 years ago
#687 removed trailing . from info field descriptions
Daniel Cameron
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about 2 years ago
#687 explicitly stating EVENT/EVENTTYPE can be used for non-symbolic variants.
Daniel Cameron
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about 2 years ago
Updated wording to reflect the conceptual separation of EVENT and variant
Daniel Cameron
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about 2 years ago
Fixed incorrect END and CN in <CNV:TR> example
Daniel Cameron
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about 2 years ago
Fixed typo in VCFv4.3 Spec (#669)
Jaken Herman
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about 2 years ago
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