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SeqAn

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  Analyzed 3 months ago

Seqan is a C++ template library of efficient data structures and algorithms for sequence analysis.

460K lines of code

9 current contributors

5 months since last commit

12 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in C++
Licenses: BSD-3-Clause
Tags bioinformatics c++ sequenceanalysis templatelibrary

genometools

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  Analyzed 3 months ago

GenomeTools genome analysis system.

598K lines of code

2 current contributors

over 1 year since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in C
Licenses: isc
Tags bioinformatics c genomeanalysis genomeannotation genomics lua python ruby sequenceanalysis

Jalview

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  Analyzed over 1 year ago

A widely used platform for multiple sequence alignment analysis built in Java. Jalview has been developed since 1998, and its development is coordinated by the Barton group at the University Of Dundee, with support from the UK's Biotechnology and Biological Sciences Research Council, The Wellcome ... [More] Trust, and contributions from students supported by The Google Summer Of Code. [Less]

456K lines of code

5 current contributors

over 1 year since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Java
Licenses: gpl3
Tags bbsrc bioinformatics biology gsoc java multiplesequencealignment science sequenceanalysis visualisation visualization wellcome

Collagene

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  Analyzed 3 months ago

Software for cloning

13.5K lines of code

0 current contributors

about 10 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Java
Licenses: BSD-3-Clause
Tags bioinformatics biology cloning genetics gibson_assembly java primerdesign restriction_digest science sequenceanalysis sequencing vector 1 more...

dockstore

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  Analyzed 3 months ago

Our VM/Docker sharing infrastructure and management component

107K lines of code

13 current contributors

4 months since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Java
Licenses: GNU-GPLv2
Tags angularjs docker java sequenceanalysis

ergatis

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  Analyzed 3 months ago

Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.

529K lines of code

0 current contributors

over 11 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Perl
Licenses: Artistic_...
Tags bioinformatics genomeannotation grid highthroughput pipeline sequenceanalysis workflows

SequenceAlpha

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  Analyzed 3 months ago

G-Quadruplex prediction & classification tools.

1.95K lines of code

0 current contributors

about 11 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Python
Licenses: BSD-3-Clause
Tags bioinformatics dna machinelearning prediction sequenceanalysis