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mdanalysis

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  Analyzed 26 days ago

MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, NAMD, LAMMPS, or Gromacs. It allows one to read molecular dynamics trajectories and access the atomic coordinates through numpy arrays. This provides a flexible and relatively fast ... [More] framework for complex analysis tasks. In addition, CHARMM-style atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. Some time-critical routines are written in C or Cython and require a working C compiler. MDAnalysis comes with an expanding library of analysis functions such as RMSD-fitting or analysis of lipid membrane bilayers. [Less]

92.6K lines of code

37 current contributors

about 2 months since last commit

6 users on Open Hub

Moderate Activity
5.0
 
0 Reviews
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Mostly written in Python
Licenses: gpl
Tags analysis bioinformatics charmm dcd gromacs lammps moleculardynamics namd python science simulations timeseries 1 more...

Mantid

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  No analysis available

The Mantid application framework provides a platform to support high-performance computing on neutron data. The framework will provide a set of common services, algorithms and data objects that can be extended further by specialised applications or directly by users if required. The main aims of the ... [More] project are as follows: To provide a framework for Data Analysis that is not instrument or technique/dependent. To support multiple target platforms. The framework must be easily extensible by Instruments Scientists/Users. The framework should provide low-level functionalities for Scripting, Visualization, Data transformation, Implementing Algorithms, Virtual Instrument Geometry. [Less]

0 lines of code

85 current contributors

0 since last commit

6 users on Open Hub

Activity Not Available
4.0
   
0 Reviews
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Mostly written in language not available
Licenses: gpl
Tags c++ hfir isis linux mac muon muons neutron neutrons nexus ornl physics 7 more...

PLplot

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  Analyzed 25 days ago

PLplot is a cross-platform library of functions that are useful for making scientific plots with UTF-8 symbols and text. PLplot can be used from within compiled languages such as Ada, C, C++, D, Fortran, Java, and OCaml, and interactively from interpreted languages such as Lua, Octave, Perl, Python ... [More] , and Tcl. The PLplot library can be used to create standard x-y plots, semilog plots, log-log plots, contour plots, 3D surface plots, mesh plots, bar charts and pie charts. Multiple graphs (of the same or different sizes) may be placed on a single page with multiple lines in each graph. A variety of file device formats such as JPEG, PDF, PNG, SVG, and others, as well as interactive device platforms such GTK+, Qt, Tk, and X are supported. [Less]

259K lines of code

5 current contributors

almost 2 years since last commit

5 users on Open Hub

Very Low Activity
5.0
 
0 Reviews
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Mostly written in C
Licenses: lgpl
Tags charting graphics graphing linux macosx plot plotting programming science tools visualization windows

KDE Education

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Claimed by KDE No analysis available

Free Educational Software based on the KDE technologies: students, parents, children, teachers, adults, you can freely use our software, copy it, modify it to your needs and enjoy learning! Please have a look at the Tour webpage to get a quick preview of our programs which are translated in more ... [More] than 65 languages. Our primary focus is on schoolchildren aged 3 to 18, and the specialized user interface needs of young users. However, we also have programs to aid teachers in planning lessons, and others that are of interest to university students and anyone else with a desire to learn! [Less]

0 lines of code

60 current contributors

0 since last commit

5 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in language not available
Licenses: gpl
Tags astronomy education educational educational-software kalzium kde kde4 kdeedu kstars math qt4 school 2 more...

Mastrave

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  No analysis available

Mastrave is a free software library written to perform vectorized scientific computing and to be as compatible as possible with both GNU Octave and Matlab computing frameworks, offering general purpose, portable and freely available features for the scientific community. Mastrave is mostly oriented ... [More] to ease complex modelling tasks such as those typically needed within environmental models, even when involving irregular and heterogeneous data series. . Semantic array programming The Mastrave project attempts to allow a more effective, quick interoperability between GNU Octave and Matlab users by using a reasonably well documented wrap around the main incompatibilities between those computing environments and by promoting a reasonably general idiom based on their common, stable syntagms. It also promotes the systematic adoption of data-transformation abstractions and lightweight semantic constraints to enable concise and reliable implementations of models following the paradigm of semantic array programming. There are a couple of underlying ideas: library design is language design and vice versa (Bell labs); language notation is definitely a "tool of thought" (Iverson), in the sense that there is a feedback between programming/mathematical notation and the ability to think new scientific insights. And perhaps ethic ones. . Science and society Mastrave is free software, which is software respecting your freedom. As many other free scientific software packages, it is offered to the scientific community to also promote the development of a free society more concerned about cooperation rather than competitiveness, heading toward knowledge and culture freedom. Such a vision implies the possibility for motivated individuals to freely access, review and contribute even to the cutting-edge academic culture. This possibility relies on the development of tools and methodologies helping to overcome economic, organizational and institutional barriers (i.e. knowledge oligopolies) while systematically promoting reproducible research. This is a long-term goal to which the free software paradigm can and has been able to actively cooperate. Copyright (C) 2005, 2006, 2007, 2008, 2009, 2010, 2011 Daniele de Rigo Verbatim copying and distribution of this entire article is permitted in any medium without royalty provided this notice is preserved. [Less]

0 lines of code

1 current contributors

0 since last commit

5 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in language not available
Licenses: gpl3_or_l...
Tags array array_oriented_programming coding data engineering library machine_learning mathematics matlab modeling numerical octave 8 more...

Airline Market Simulator

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  Analyzed 26 days ago

dSim is a distributed revenue management simulator. While being very basic at this moment, it integrates endpoints for more advanced features and a complete forecasting mechanism. This release is mainly for demonstration purpose.

428K lines of code

1 current contributors

2 months since last commit

5 users on Open Hub

Very Low Activity
4.66667
   
0 Reviews
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Mostly written in JavaScript
Licenses: lgpl21
Tags airline analysis c++ ccm customer_choice discrete_event distribution inventory_management market mathematics monte_carlo probability 8 more...

C++ Standard Airline IT Object Library

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  Analyzed 25 days ago

That project aims at providing a clean API, and the corresponding C++ implementation, for the basis of Airline IT Business Object Model (BOM), ie, to be used by several other Open Source projects, such as RMOL, Air-Sched, Travel-CCM, OpenTREP, etc.

17 lines of code

1 current contributors

2 months since last commit

5 users on Open Hub

Very Low Activity
4.75
   
0 Reviews
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Mostly written in shell script
Licenses: lgpl21
Tags airline analysis boost c++ inventory inventory_management mathematics monte_carlo pricing probability python research 6 more...

Yacas

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  Analyzed 25 days ago

YACAS is an easy to use, general purpose Computer Algebra System, a program for symbolic manipulation of mathematical expressions. It uses its own programming language designed for symbolic as well as arbitrary-precision numerical computations. The system has a library of scripts that implement many ... [More] of the symbolic algebra operations; new algorithms can be easily added to the library. YACAS comes with extensive documentation (hundreds of pages) covering the scripting language, the functionality that is already implemented in the system, and the algorithms we used. [Less]

199K lines of code

5 current contributors

7 months since last commit

4 users on Open Hub

Very Low Activity
0.0
 
1 Review
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Mostly written in JavaScript
Licenses: lgpl21_or...
Tags algebra cas computer_algebra_system linux mac macosx math mathematics maths science windows

graph-tool

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  Analyzed 24 days ago

graph-tool is a python module to help with statistical analysis of graphs. Its feature set includes support for both directed and undirected graphs with arbitrary vertex and edge properties, edge/vertex filtering, correlated random graph generation and community detection. It supports also ... [More] several statistical measurements, such as: degree histogram, combined degree histogram, vertex-vertex degree correlation, average nearest neighbours degree, vertex-edge-vertex correlation, clustering coefficients, extended clustering coefficient, assortativity coefficient, betweenness centrality, average distance, component statistics and reciprocity. The core algorithms are written in C++, making use of the Boost Graph Library, and template metaprogramming techniques, with performance in mind. [Less]

71.7K lines of code

0 current contributors

over 8 years since last commit

4 users on Open Hub

Inactive
5.0
 
0 Reviews
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Mostly written in C++
Licenses: gpl3
Tags algorithms boost c++ complexnetworks c++templates graph graphml graphviz library linux mac math 10 more...

GenoViz

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  Analyzed 25 days ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

187K lines of code

35 current contributors

over 1 year since last commit

4 users on Open Hub

Very Low Activity
5.0
 
1 Review
I Use This
Mostly written in Java
Licenses: common_pu...
Tags bio-informatics bioinformatics biology cross-platform genetics java research science scientific visualisation visualization