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SnpEff

S

Analyzed 27 days ago

SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

145K lines of code

2 current contributors

4 months since last commit

1 users on Open Hub

Low Activity

I Use This

Mostly written in Java

Licenses: lgplv3

Tags bioinformatics genome mutation_identification variant_annotation

MiModD

Analyzed 27 days ago

MiModD is an integrated solution for mapping-by-sequencing analysis of whole-genome sequencing (WGS) data from laboratory model organisms. It enables geneticists to identify the genetic mutations present in an organism starting from just raw WGS read data and a reference genome without the help of a ... [More]

16.8K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Python

Tags bioinformatics galaxy genome mapping_by_sequencing model_organisms mutation_identification read_alignment sequencing variant_calling

CloudMap SNP mapping

C

Analyzed 28 days ago

CloudMap: A Cloud-based Pipeline for Analysis of Mutant Genome Sequences

1.18K lines of code

0 current contributors

about 7 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Python

Licenses: No declared licenses

Tags bioinformatics galaxy mapping_by_sequencing mutation_identification pipelinecomponent

GEMINI_genome_mining

Analyzed 27 days ago

a lightweight db framework for exploring genetic variation

27.6K lines of code

3 current contributors

almost 5 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Python

Licenses: No declared licenses

Tags bioinformatics genome mutation_identification variant_annotation