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  • brain_imaging (4)

    nipype

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      Analyzed about 1 month ago

    Nipype, an open-source, community-developed initiative under the umbrella of NiPy, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages ... [More] interactive exploration of algorithms from different packages (e.g., SPM, FSL, FreeSurfer, AFNI, Slicer), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems. [Less]

    159K lines of code

    40 current contributors

    3 months since last commit

    12 users on Open Hub

    Activity Not Available
    5.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: BSD-3-Clause
    Tags brain_imaging neuroimaging neuroinformatics nipy pipeline provenance python scientific workflow

    C-PAC

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      Analyzed about 1 month ago

    Configurable Pipeline for the Analysis of Connectomes

    48.7K lines of code

    9 current contributors

    12 months since last commit

    1 users on Open Hub

    Activity Not Available
    0.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: No declared licenses
    Tags analysis brain_imaging connectome fmri mri neuroimaging neuroinformatics neuroscience nipype pipeline preprocessing scientific 2 more...

    pyClusterROI

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      Analyzed about 1 month ago

    Python script to perform the spatially constrained parcellation of funcitonal MRI data as described in Craddock et al., Human Brain Mapp., 33 (9) 2012

    767 lines of code

    0 current contributors

    about 10 years since last commit

    1 users on Open Hub

    Activity Not Available
    0.0
     
    0 Reviews
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    Mostly written in Python
    Licenses: No declared licenses
    Tags brain_imaging clustering fmri neuroimaging nibabel parcellation python

    FreeROI

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      Analyzed about 1 month ago

    FreeROI is a versatile image processing software developed for neuroimaging data. Its goal is to provide a user-friendly interface for neuroimaging researchers to visualize and analyze their data, especially in defining region of interest (ROI) for ROI analysis.

    16K lines of code

    3 current contributors

    about 4 years since last commit

    1 users on Open Hub

    Activity Not Available
    0.0
     
    0 Reviews
    I Use This
    Mostly written in Python
    Licenses: BSD-3-Clause
    Tags brain_imaging fmri neuroimaging neuroinformatics neuroscience parcellation python segmentation