Project Summary
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
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In a Nutshell, SortMeRNA...
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has a well established, mature codebase
maintained by a small development team
with stable Y-O-Y commits -
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took an estimated 10 years of effort (COCOMO model)
starting with its first commit in March, 2014
ending with its most recent commit about 1 year ago
Quick Reference
GNU Lesser General Public License v3.0
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These details are provided for information only. No information here is legal advice and should not be used as such.
Project Security
Vulnerabilities per Version ( last 10 releases )
There are no reported vulnerabilities
Project Vulnerability Report
Security Confidence Index
Vulnerability Exposure Index
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30 Day SummaryDec 20 2023 — Jan 19 2024
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12 Month SummaryJan 19 2023 — Jan 19 2024
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