Slicer4

BUG: Fix uninitialized value in vtkSlicerVolumesLogic. This commit fix the following error reported by valgrind memcheck tool: ==1290== ==1290== Conditional jump or move depends on uninitialised value(s) ==1290== at 0x3E5C64FA: ... [More] vtkSlicerVolumesLogic::SetCompareVolumeGeometryEpsilon(double) (vtkSlicerVolumesLogic.cxx:1042) ==1290== by 0x3E5C35BE: vtkSlicerVolumesLogic::vtkSlicerVolumesLogic() (vtkSlicerVolumesLogic.cxx:472) ==1290== by 0x3E5C22B4: vtkSlicerVolumesLogic::New() (vtkSlicerVolumesLogic.cxx:279) ==1290== by 0x436D557F: qSlicerVolumesModule::createLogic() (qSlicerVolumesModule.cxx:167) ==1290== by 0x5D60DC1: qSlicerAbstractCoreModule::logic() (qSlicerAbstractCoreModule.cxx:280) ==1290== by 0x5D603AD: qSlicerAbstractCoreModule::initialize(vtkSlicerApplicationLogic*) (qSlicerAbstractCoreModule.cxx:99) ==1290== by 0x5D928A7: qSlicerModuleFactoryManager::loadModule(QString const&, QString const&) (qSlicerModuleFactoryManager.cxx:170) ==1290== by 0x5D92759: qSlicerModuleFactoryManager::loadModule(QString const&, QString const&) (qSlicerModuleFactoryManager.cxx:157) ==1290== by 0x5D92414: qSlicerModuleFactoryManager::loadModule(QString const&) (qSlicerModuleFactoryManager.cxx:110) ==1290== by 0x406B81: (anonymous namespace)::SlicerAppMain(int, char**) (Main.cxx:231) ==1290== by 0x407213: main (Main.cxx:292) ==1290== [Less]

BUG: Update SimpleFilters with patches for LabelMapVolume node changes. 48b7873 Remove input based automatic LabelMap output restriction. c90a778 Replace LabelMap checkbox with option in output combo box d3f3bf1 Restore support for label map volumes ... [More] as input a560064 Correct nodeType to be a list of one element. 2f392a5 Update to use new MRMLLabelmapNode From: Bradley Lowekamp [Less]

ENH: Creating Qt designer plugin for qSlicerSimpleMarkupsWidget From: Matthew Holden

BUG: Allow qSlicerSimpleMarkupsWidget to be instantiated without Slicer app From: Matthew Holden

STYLE: Refactor GrowCut effect logic moving popup outside of the logic Rational: GUI for user interaction should not be added to the logic. Instead the check should be done in the user interface code. From: Jean-Christophe Fillion-Robin

ENH: Add warning when GrowCut effect is attempted with unsupported image type If GrowCut editor effect is attempted to be applied on an image or labelmap that is not short then a warning is displayed for the user. See details here: http://www.na-mic.org/Bug/view.php?id=2873 From: Andras Lasso

STYLE: Remove version string from loadable module xml description This will facilitate release process. It will be one less element to update when releasing a new version of Slicer. Rational: Some loadable module include a xml file describing their ... [More] parameter. Similarly to CLI module, this file is used on the wiki to "automatically" document [1] the option provided by a loadable module. The MediaWiki template responsible for transforming the XML into wiki code is available in [2]. Since it doesn't make use of the version information, this commit simplify the maintenance by removing it. [1] http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/DocumentModule#Documentation_for_a_loadable_module [2] http://www.slicer.org/slicerWiki/index.php?title=Template:Documentation/Nightly/module-description [Less]

STYLE: Remove version number from acknowledgment in Welcome module Since the html page is only visible from within Slicer, there is no need to mention the version number again. This will be one less element to update when releasing a new version of Slicer.

ENH: Added removeAttribute function to MRML node comboboxes and proxy model Attribute filtering in MRML node comboboxes work with only one attribute at a time. So filtering could be "disabled" for volumes by simply overwriting it with the labelmap ... [More] attribute. As it does not exist any more, it was needed to add the corresponding removeAttribute function to qMRMLNodeComboBox and qMRMLSortFilterProxyModel (it was already implemented in qMRMLNodeFactory) [Less]

STYLE: Facilitate release process updating wiki URL with Nightly namespace This commit updates the templates to use wiki documentation url mentioning the Nightly version. This will facilitate maintenance avoiding to explicitly update the file after ... [More] each release. More specifically, thanks to the previous commit (ENH: Update wiki URLs in module panel to reference correct documentation.), the module panel has been instrumented to update the module description so that documentation URLs are updated at runtime to point to the correct version of the wiki documentation. Note also that a new FAQ section entitled "Documentation Writing" has been added to the Developer FAQ [1]. At the time of this commit, it reference the following question: How to reference module or extension documentation hosted on the Slicer wiki ? [1] http://wiki.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Developers/FAQ#Developer_FAQ:_Writing_Documentation [Less]