R

Ray, a de novo assembler using MPI 2.2

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Analyzed 12 months ago. based on code collected 12 months ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 16, 2023 — Jan 16, 2024 Showing page 89 of 90 Search / Filter on:
Fixed:	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
Summary of today's work:	Sébastien Boisvert	More...				almost 15 years ago
The memory usage is lowered, now each vertex is a (uint64_t,char,char,bool)	Sébastien Boisvert	More...				almost 15 years ago
* removed cout's SB	Sébastien Boisvert	More...				almost 15 years ago
* fixed compilation warnings.	Sébastien Boisvert	More...				almost 15 years ago
* Edges are stored as a 'char'.	Sébastien Boisvert	More...				almost 15 years ago
* The coverage of a vertex is now stored as a 'char', with a maximum of 255.	Sébastien Boisvert	More...				almost 15 years ago
This behavior is correct:	Sébastien Boisvert	More...				almost 15 years ago
Updated TODO .	Sébastien Boisvert	More...				almost 15 years ago
* Fixed a SEG FAULT when sending large sequences.	Sébastien Boisvert	More...				almost 15 years ago
Reduced communication:	Sébastien Boisvert	More...				almost 15 years ago
Done: now I have 2n seeds! yay. also check that added vertices are 1-in 1-out (work in progress.)	Sébastien Boisvert	More...				almost 15 years ago
No message, just commiting stuff.	Sébastien Boisvert	More...				almost 15 years ago
* show progress for vertex seeding.	Sébastien Boisvert	More...				almost 15 years ago
* Show progress when attaching reads.	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
* added version in stdout * tells if the user uses Open MPI.	Sébastien Boisvert	More...				almost 15 years ago
* Ray returns immediatly if given an invalid configuration file.	Sébastien Boisvert	More...				almost 15 years ago
* Reads get attached now.	Sébastien Boisvert	More...				almost 15 years ago
Seems ok to me:	Sébastien Boisvert	More...				almost 15 years ago
* will fix these later or never (they are not that important.):	Sébastien Boisvert	More...				almost 15 years ago
* Fixed a bug in building seeds.	Sébastien Boisvert	More...				almost 15 years ago
* Fixed problem with Finalize and MPI_Barrier. * The program returns correctly upon completion.	Sébastien Boisvert	More...				almost 15 years ago
* the seeds are now computed correctly. (need to test stuff in TODO.txt) * parallel code works, but the MPI_Finalize calls hang because of MPI_Barrier calls waiting to complete. * MPI_Send works well because small messages are sent eagerly in Open-MPI 1.4.1. * use can switch back to MPI_Isend by modifying the code.	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago
[no comment]	Sébastien Boisvert	More...				almost 15 years ago

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