R

Ray, a de novo assembler using MPI 2.2

0

I Use This!

Activity Not Available

Commits : Listings

Analyzed 12 months ago. based on code collected 12 months ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 16, 2023 — Jan 16, 2024 Showing page 87 of 90 Search / Filter on:
Added segments.	Sébastien Boisvert	More...				almost 15 years ago
Added a script to analyse assemblies. Sébastien Boisvert.	Sébastien Boisvert	More...				almost 15 years ago
Debugging stuff.	Sébastien Boisvert	More...				almost 15 years ago
Work in progress.	Sébastien Boisvert	More...				almost 15 years ago
Removed cout's	Sébastien Boisvert	More...				almost 15 years ago
Partial fix for #15 (when complete coverage of a contig invalids it)	Sébastien Boisvert	More...				almost 15 years ago
* Implemented Ticket #22 (new enhancement) -- possibly use a map<,> to hold information on path lengths. -> this allows a log(N) length extraction instead of the unpopular N. * Fixing #22 fixes #41 ( Ticket #41 (new defect) -- Contigs are duplicated on ls28) * This will presumably eases #37 when colosse.clumeq.ca is not crashed...	Sébastien Boisvert	More...				almost 15 years ago
Adding progression in fusion steps. SB	Sébastien Boisvert	More...				almost 15 years ago
Documented the code for MPI implementations.	Sébastien Boisvert	More...				almost 15 years ago
Detection of MPICH2 and Open-MPI is done.	Sébastien Boisvert	More...				almost 15 years ago
Fixed ticket http://genome.ulaval.ca/seb-trac/trac/ticket/30.	Sébastien Boisvert	More...				almost 15 years ago
Use shortcut when sending message to self.	Sébastien Boisvert	More...				almost 15 years ago
Fixed the detection of MPICH2.	Sébastien Boisvert	More...				almost 15 years ago
Added a detection of MPICH2 turn on Isend when it is the case.	Sébastien Boisvert	More...				almost 15 years ago
Removing all Barriers.	Sébastien Boisvert	More...				almost 15 years ago
Removed the qsub SGE submission script. It does not belong there.	Sébastien Boisvert	More...				almost 15 years ago
Removed TODO.txt	Sébastien Boisvert	More...				almost 15 years ago
Debuging on colosse.	Sébastien Boisvert	More...				almost 15 years ago
* Removed time.h and sys/time.h from includes.	Sébastien Boisvert	More...				almost 15 years ago
* Remove calls to Get_processor_name in code.	Sébastien Boisvert	More...				almost 15 years ago
SRA001125 preliminary results:	Sébastien Boisvert	More...				almost 15 years ago
* added progress when attaching reads.	Sébastien Boisvert	More...				almost 15 years ago
Implemented:	Sébastien Boisvert	More...				almost 15 years ago
* Removed all MPI_Barrier calls from the program (they are broken with shared memory for my application anyway, apparently.)	Sébastien Boisvert	More...				almost 15 years ago
Speed regulator works on Llactis with 8 MPI processes.	Sébastien Boisvert	More...				almost 15 years ago
Testing speed limitation.	Sébastien Boisvert	More...				almost 15 years ago
Removing ther Makefile for colosse.	Sébastien Boisvert	More...				almost 15 years ago
The hang is caused by the btl sm.	Sébastien Boisvert	More...				almost 15 years ago
Currently investigating the hang.	Sébastien Boisvert	More...				almost 15 years ago
* Removed the DUMMY message.	Sébastien Boisvert	More...				almost 15 years ago

←
1
2
…
82
83
84
85
86
87
88
89
90
→