Central Proteomics Facilities Pipeline

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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 6 of 37 Search / Filter on:
Proper fix in config parser for no-trailing-slash on data dir	Phil Charles	More...				over 11 years ago
Cleaned up the searches form to move the MASCOT_DEFAULT_SEARCH toggle to serverside FormFu from clientside javascript	Phil Charles	More...				over 11 years ago
Tweak submission view to ensure the 'Actions' section will always show either a button or an error message	Phil Charles	More...				over 11 years ago
submission.get_path() should not assume data directory specified in config has a trailing slash	Phil Charles	More...				over 11 years ago
Fix version number in update script comment	Phil Charles	More...				over 11 years ago
Merge branch 'utsw' of /srv/git/cpfp into utsw	David Trudgian	More...				over 11 years ago
Revert "Demo specific"	David Trudgian	More...				over 11 years ago
Merge branch 'master' of /home/dtrudg/cpfp	David Trudgian	More...				over 11 years ago
Demo specific	David Trudgian	More...				over 11 years ago
Correct URL for a ModLS image	David Trudgian	More...				over 11 years ago
Correct URL for a ModLS image	David Trudgian	More...				over 11 years ago
Store q-values for search hits in individual SQL statements per hit. Neccessary to avoid huge horrible update transcations on very large datasets.	David Trudgian	More...				over 11 years ago
Updating CHANGES file	David Trudgian	More...				over 11 years ago
Remove out-of-date html module docs	David Trudgian	More...				over 11 years ago
Update install docs a bit	David Trudgian	More...				over 11 years ago
Remove incorrect 2.0.4 DB create script	David Trudgian	More...				over 11 years ago
Make original ModLS score default. Don't use experimental stuff	David Trudgian	More...				over 11 years ago
Version 2.1.0 create database script added	David Trudgian	More...				over 11 years ago
We'll call this 2.1.0 not 2.0.4....	David Trudgian	More...				over 11 years ago
Comet not selected by default for searches	David Trudgian	More...				over 11 years ago
Can't get count for PSMs without spectra back from PepXMLImport threads easily. Just warn for now. Handle search_results without PP/IP results from Myrimatch	David Trudgian	More...				over 11 years ago
Merge branch 'utsw' of /srv/git/cpfp into utsw	David Trudgian	More...				over 11 years ago
Merge branch 'utsw' of /srv/git/cpfp into utsw	David Trudgian	More...				over 11 years ago
Merge branch 'utsw' of /srv/git/cpfp into utsw	David Trudgian	More...				over 11 years ago
Fix incorrect assignment to Moose attr in PepXMLImporter	David Trudgian	More...				over 11 years ago
Fix protein level inaccurate FDR warnings on search/meta-search view pages	David Trudgian	More...				over 11 years ago
Use 2-decoy sets correctly to avoid testing on the training set. For PeptideProphet and iProphet semi-supervised fitting use DECOY1 set. For FDR assessment use DECOY2 set	David Trudgian	More...				over 11 years ago
Don't add search hits to the database in PepXMLImporter.pm if they don't have valid probability or fragment_spectrum values	David Trudgian	More...				over 11 years ago
Fix patch for InteractParser - ouput is True not False....	David Trudgian	More...				over 11 years ago
Patch InteractParser in TPP so that it correctly closes .pep.xml even when the last spectrum_query has an empty search_result block	David Trudgian	More...				over 11 years ago

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