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HTS-barcode-checker

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Analyzed 11 days ago. based on code collected 12 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 30, 2024 — Jan 30, 2025 Showing page 5 of 9 Search / Filter on:
updated license to include UAS	Rutger Vos as rvosa	More...				almost 12 years ago
cleaned markdown	Rutger Vos as rvosa	More...				almost 12 years ago
updated readme	Rutger Vos as rvosa	More...				almost 12 years ago
removing v1.0 files	Rutger Vos as rvosa	More...				almost 12 years ago
moving local appendices file	Rutger Vos as rvosa	More...				almost 12 years ago
removing old version	Rutger Vos as rvosa	More...				almost 12 years ago
re-organized conform doi:10.1371/journal.pcbi.1000424	Rutger Vos as rvosa	More...				almost 12 years ago
updated ignore patterns	Rutger Vos as rvosa	More...				almost 12 years ago
adding BSD-3 license	Rutger Vos as rvosa	More...				almost 12 years ago
updated README	Rutger Vos as rvosa	More...				almost 12 years ago
removing old file	Rutger Vos as rvosa	More...				almost 12 years ago
explicit ownership of source files discourages editing. removed.	Rutger Vos as rvosa	More...				almost 12 years ago
renamed pdf	Rutger Vos as rvosa	More...				almost 12 years ago
removing old project materials	Rutger Vos as rvosa	More...				almost 12 years ago
More bug fixes in the CITES_check.py script, not all parameters turned out to be passed on correctly to the subscripts	Y-Lammers	More...				almost 12 years ago
Added a force and avoid update CITES function to the CITES_check.py script, plus some general fixes	Y-Lammers	More...				almost 12 years ago
Updated copy of the CITES local database, pipeline flowchart and the Retrieve_CITES.py script now behaves as intended	Y-Lammers	More...				almost 12 years ago
Several fixes for the Retrieve_CITES and Blast_and_Compare scripts	Y-Lammers	More...				almost 12 years ago
the user can now specify the blast settings in the blast_and_compare.py script	Y-Lammers	More...				almost 12 years ago
Retrieve_CITES script now succesfully creates a .csv file with all CITES species and taxon identifiers (if present in genbank), blast_and_compare.py script Blasts user sequences and based on the CITES list determines if it is a protected species	Y-Lammers	More...				almost 12 years ago
Retrieve CITES script now correctly implements TNRS, added a flowchart to the doc folder	Y-Lammers	More...				almost 12 years ago
Retrieve_CITES.py script now checks for synonyms	Y-Lammers	More...				almost 12 years ago
Retrieve_CITES.py script added to create a local CITES database including ncbi taxon_ids and species synonyms	Y-Lammers	More...				almost 12 years ago
Merge branch 'master' of https://github.com/ncbnaturalis/barcode-blast-pipeline	alex-hoogkamer	More...				about 12 years ago
final commit	alex-hoogkamer	More...				about 12 years ago
windows pipe script deleted	bolderink	More...				about 12 years ago
pipeline for windows(test)	bolderink	More...				about 12 years ago
start.py aangepast	alex-hoogkamer	More...				about 12 years ago
userguide upload	bolderink	More...				about 12 years ago
doc/ toegevoegd	alex-hoogkamer	More...				about 12 years ago

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