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Commits : Listings

Analyzed 11 days ago. based on code collected 12 days ago.
Jan 30, 2024 — Jan 30, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
updated README
Rutger Vos
as rvosa
More... over 11 years ago
updated Markdown formatting
Rutger Vos
as rvosa
More... over 11 years ago
updated README
Rutger Vos
as rvosa
More... over 11 years ago
updated README
Rutger Vos
as rvosa
More... over 11 years ago
updated header
Rutger Vos
as rvosa
More... over 11 years ago
Added logging function to script to keep track of the pipelines activity and potential errors. Updated the readme.
Y-Lammers
More... over 11 years ago
cleaned up comments in Retrieve_CITES.py script
Y-Lammers
More... over 11 years ago
Merge https://github.com/naturalis/CITES-checker
Y-Lammers
More... over 11 years ago
Updated README.md
Y-Lammers
More... over 11 years ago
Updated README.md
Lammers
More... over 11 years ago
Fixed several issues in the 2 python scripts that caused time-outs while blasting or updating the CITES database, updated the README and added a test dataset
Lammers
More... over 11 years ago
Updated the blasting method of the CITES_check.py script, it will now parallel blast a larger number of sequences and correctly handle blasting errors. Added an extra column in the output file that will display the species for each blast-hit, regardless if it is a CITES species or not.
Lammers
More... over 11 years ago
Retrieve_CITES script now correctly handles the file paths, changes in the help information of the CITES_check.py script
Y-Lammers
More... almost 12 years ago
Retrieve_CITES script now correctly handles the file paths, changes in the help information of the CITES_check.py script
Y-Lammers
More... almost 12 years ago
Updated flowchart, added the Reconcile_names_db.csv for user submitted CITES synonyms and small fixed in the scripts
Y-Lammers
More... almost 12 years ago
Updated flowchart, added the Reconcile_names_db.csv for user submitted CITES synonyms and small fixed in the scripts
Y-Lammers
More... almost 12 years ago
added a header to the local CITES database containing information for the different columns
Y-Lammers
More... almost 12 years ago
updated the flowchart
Y-Lammers
More... almost 12 years ago
Added a Blacklist to the data folder, CITES_check.py script now ignores lines starting with a #
Y-Lammers
More... almost 12 years ago
Blacklist now properly extracts the genbank IDs
Y-Lammers
More... almost 12 years ago
Retrieve_CITES.py script now adds footnotes to the CITES_db.csv file, the old CITES_db.csv file has been updated
Youri Lammers
More... almost 12 years ago
CITES_Check.py now BLASTS 50 sequences at once, rather than 1, this speeds up the BLAST process a bit. Changed the CITES output, removed some duplicate information (blast hit species). Added some additional comments in the scripts
Y-Lammers
More... almost 12 years ago
updated the readme
Y-Lammers
More... almost 12 years ago
Combined the CITES_check and blast and compare scripts into one single script (CITES_check.py) since the original CITES_check.py script had no real use. updated the flowchart
Y-Lammers
More... almost 12 years ago
adding pdf of ms
Rutger Vos
as rvosa
More... almost 12 years ago
removing .gitignore file
Rutger Vos
as rvosa
More... almost 12 years ago
removing old BLAST XML file
Rutger Vos
as rvosa
More... almost 12 years ago
renaming anonymized infile
Rutger Vos
as rvosa
More... almost 12 years ago
removing identifiable run file
Rutger Vos
as rvosa
More... almost 12 years ago
removing old manuals
Rutger Vos
as rvosa
More... almost 12 years ago