blackrim

Ann Arbor, MI, USA

Managed Projects

phyutility

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Analyzed about 1 month ago

Phyutility (fyoo-til-i-te) is a command line program that performs simple analyses or modifications on both trees and data matrices. Makes use of JADE (PEBLS) and JEBL libraries. Please see the NEWS page for info concerning updates, etc. Please use this citation when using Phyutility Smith, S. ... [More]

51.8K lines of code

0 current contributors

about 11 years since last commit

0 users on Open Hub

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Mostly written in Java

Licenses: gpl3_or_l...

Tags bioinformatics biology evolution java phylogenetics phyloinformatics

phlawd

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Analyzed about 1 month ago

PHLAWD (pronounced flawd) allows for the creation of large (mega) phylogenies using NCBI databases. The code allows for multithreaded execution. The program has been used extensively for creating large phylogenies.

12.5K lines of code

0 current contributors

almost 7 years since last commit

0 users on Open Hub

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Mostly written in C++

Tags phylogenetics python

lagrange

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Analyzed about 1 month ago

4.82K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

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Mostly written in C++

treePL

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Analyzed about 1 month ago

Phylogenetic penalized likelihood calculator

11.5K lines of code

0 current contributors

9 months since last commit

0 users on Open Hub

Activity Not Available

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Mostly written in C++