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The Ray Parallel Genome Assembler
T
Analyzed 2 months ago
Ray assembler
Ray is a parallel de novo genome assembler that utilises the message-passing interface everywhere and is implemented using peer-to-peer communication.
Ray is implemented using the Ray Platform, a message-passing-interface programming framework.
Ray is documented in
Licenses:
gpl3
simpatico
S
Analyzed 2 months ago
Simpatico is a very flexible package for Monte Carlo (MC), molecular dynamics (MD) and hybrid MD/MC simulations of classical mechanical models of polymeric and molecular liquids. It has thus far been used for simulating coarse-grained bead-spring models of polymer liquids. It provides
mcsimpi
M
Analyzed 2 months ago
MCSimpiPerforms Monte Carlo simulations of particles interacting via short-range potentials in N dimensions. Runs on parallel hardware via the MPI2 C++ API.
Mostly written in language not available
Licenses:
gpl3_or_l...
mpimemu
M
Analyzed 3 months ago
A simple MPI application that approximates memory usage of MPI libraries.
Licenses:
No declared licenses
tao4py
T
Analyzed 2 months ago
TAO is aimed at the solution of large-scale optimization problems on high-performance architectures. It is suitable for both single-processor and massively-parallel architectures were an implementation of the MPI standard is available.
tao4py are Python bindings for TAO, the Toolkit for Advanced
phdeem
P
Analyzed 2 months ago
A wrapper library for using hdeem from within a MPI context.
Licenses:
BSD_License
Ray, a de novo assembler using MPI 2.2
R
Analyzed 2 months ago
de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.