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Analyzed about 1 year ago. based on code collected over 4 years ago.
Aug 25, 2020 — Sep 24, 2020
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Allowed any view to be given a GeneralUnit as a property. Added in code to support automatic interconversion of the unit property into the value (so that you can continue to do maths with that property) More... over 2 years ago
Added a GeneralUnitProperty so that we can store any set of units as a property in a molecule (or any sub view) More... over 2 years ago
I've added ViewPropertyProperty classes for all the view types. I have also copied the list-type interface from AtomProperty to all of the other ViewProperty types. I have confirmed that this works according to what is described in the tutorial. More... over 2 years ago
Added a `PropertyPtr` type for ResProperty, meaning that we can now store and extract any type that can be wrapped via the `sire.base.wrap` function as a residue property. More... over 2 years ago
Cleaned up the tutorial, fixing typos, bugs etc. More... over 2 years ago
I've finished the chapter on using Cursor and Cursors objects. It provides a very nice and clean property editing API (plus an API to rename / renumber atoms etc, not that this is described yet in the tutorial). More... over 2 years ago
Added a Cursors object to hold a list of Cursor objects, to make multiple updates and committing easier. Added a 'apply' function that mirrors what is available for the molecule views. More... over 2 years ago
Fixed circular import, unit zero initialisation, and some atom property wrapping issues More... over 2 years ago
Add missing ; More... over 2 years ago
Account for sin(theta) term in standardstatecorrection More... over 2 years ago
Added a description of the Cursor to the tutorial, and cleaning up its API More... over 2 years ago
Cleaned up the GeneralUnit class so that it understands both zero and dimensionless values. This lets it cope better with such values. More... over 2 years ago
Correct expression for flat-bottomed restraint More... over 2 years ago
Finished the page on atom properties. Added an `apply` function which is *really* useful. More... over 2 years ago
Working on the properties section of the tutorial More... over 2 years ago
Fixed crashes caused by the change in behaviour of AtomCoords/AtomProperty count and size functions More... over 2 years ago
Added functions that make the AtomProperties behave more like standard containers. This makes it *much* easier to work with properties, e.g. More... over 2 years ago
Confirmed that the tutorial is all working :-) More... over 2 years ago
Added in docs about the `protein` search term. More... over 2 years ago
Working through the tutorial, making sure that everything works and fixing typos etc. More... over 2 years ago
Merge branch 'devel' of https://github.com/michellab/Sire into feat_2023_0 More... over 2 years ago
I've added in a wrapper around the new Sire Bond class so that this can be properly handled as part of the return from a search query More... over 2 years ago
No - this was needed to fix the test in the sandpit. Also removed a forgotten print debug More... over 2 years ago
Fixed the `.molecules()` function to work when only a single molecule is returned. Added in the `.bonds()` function to show how to iterate over bonds (although we do need to add a BSS.Bond object). More... over 2 years ago
Added '.atoms()', '.residues()`, `.molecules()` etc functions that allow the user to be explicit about what they are iterating over when iterating over a search result More... over 2 years ago
Merge branch 'michellab:devel' into devel More... over 2 years ago
Improved the performance of squash() and unsquash() (#20) More... over 2 years ago
Replace pickled objects used in tests. More... over 2 years ago
Update installation instructions. More... over 2 years ago
Add note about building BioSimSpace on top of Sire. [ci skip] More... over 2 years ago