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Commits
: Listings
Analyzed
about 1 year
ago. based on code collected
over 4 years
ago.
Aug 25, 2020 — Sep 24, 2020
Showing page 23 of 97
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Allowed any view to be given a GeneralUnit as a property. Added in code to support automatic interconversion of the unit property into the value (so that you can continue to do maths with that property)
Christopher Woods
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over 2 years ago
Added a GeneralUnitProperty so that we can store any set of units as a property in a molecule (or any sub view)
Christopher Woods
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over 2 years ago
I've added ViewPropertyProperty classes for all the view types. I have also copied the list-type interface from AtomProperty to all of the other ViewProperty types. I have confirmed that this works according to what is described in the tutorial.
Christopher Woods
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over 2 years ago
Added a `PropertyPtr` type for ResProperty, meaning that we can now store and extract any type that can be wrapped via the `sire.base.wrap` function as a residue property.
Christopher Woods
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over 2 years ago
Cleaned up the tutorial, fixing typos, bugs etc.
Christopher Woods
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over 2 years ago
I've finished the chapter on using Cursor and Cursors objects. It provides a very nice and clean property editing API (plus an API to rename / renumber atoms etc, not that this is described yet in the tutorial).
Christopher Woods
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over 2 years ago
Added a Cursors object to hold a list of Cursor objects, to make multiple updates and committing easier. Added a 'apply' function that mirrors what is available for the molecule views.
Christopher Woods
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over 2 years ago
Fixed circular import, unit zero initialisation, and some atom property wrapping issues
Christopher Woods
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over 2 years ago
Add missing ;
finlayclark
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over 2 years ago
Account for sin(theta) term in standardstatecorrection
finlayclark
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over 2 years ago
Added a description of the Cursor to the tutorial, and cleaning up its API
Christopher Woods
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over 2 years ago
Cleaned up the GeneralUnit class so that it understands both zero and dimensionless values. This lets it cope better with such values.
Christopher Woods
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over 2 years ago
Correct expression for flat-bottomed restraint
finlayclark
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over 2 years ago
Finished the page on atom properties. Added an `apply` function which is *really* useful.
Christopher Woods
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over 2 years ago
Working on the properties section of the tutorial
Christopher Woods
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over 2 years ago
Fixed crashes caused by the change in behaviour of AtomCoords/AtomProperty count and size functions
Christopher Woods
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over 2 years ago
Added functions that make the AtomProperties behave more like standard containers. This makes it *much* easier to work with properties, e.g.
Christopher Woods
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over 2 years ago
Confirmed that the tutorial is all working :-)
Christopher Woods
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over 2 years ago
Added in docs about the `protein` search term.
Christopher Woods
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over 2 years ago
Working through the tutorial, making sure that everything works and fixing typos etc.
Christopher Woods
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over 2 years ago
Merge branch 'devel' of https://github.com/michellab/Sire into feat_2023_0
Christopher Woods
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over 2 years ago
I've added in a wrapper around the new Sire Bond class so that this can be properly handled as part of the return from a search query
Christopher Woods
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over 2 years ago
No - this was needed to fix the test in the sandpit. Also removed a forgotten print debug
Christopher Woods
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over 2 years ago
Fixed the `.molecules()` function to work when only a single molecule is returned. Added in the `.bonds()` function to show how to iterate over bonds (although we do need to add a BSS.Bond object).
Christopher Woods
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over 2 years ago
Added '.atoms()', '.residues()`, `.molecules()` etc functions that allow the user to be explicit about what they are iterating over when iterating over a search result
Christopher Woods
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over 2 years ago
Merge branch 'michellab:devel' into devel
Zhiyi Wu
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over 2 years ago
Improved the performance of squash() and unsquash() (#20)
Miroslav Suruzhon
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over 2 years ago
Replace pickled objects used in tests.
Lester Hedges
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over 2 years ago
Update installation instructions.
Lester Hedges
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over 2 years ago
Add note about building BioSimSpace on top of Sire. [ci skip]
Lester Hedges
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over 2 years ago
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