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SequenceServer

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Analyzed about 1 year ago. based on code collected about 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 16, 2023 — Jan 16, 2024 Showing page 64 of 74 Search / Filter on:
disallow launching SequenceServer as `ruby sequenceserver.rb`	Anurag Priyam	More...				about 13 years ago
define a Gemspec (#17)	Anurag Priyam	More...				about 13 years ago
add an executable to lanuch SequenceServer	Anurag Priyam	More...				about 13 years ago
default configuration file is now `~/.sequenceserver.yml`	Anurag Priyam	More...				about 13 years ago
use a directory structure better suited for gemification	Anurag Priyam	More...				about 13 years ago
explicitly define app root -- SequenceServer's installation directory	Anurag Priyam	More...				about 13 years ago
update tests	Anurag Priyam	More...				about 13 years ago
ship test database (fire ant genome) with SequenceServer	Anurag Priyam	More...				about 13 years ago
deal with a completely commented out (empty) configuration file	Anurag Priyam	More...				about 13 years ago
manage load path with Bundler	Anurag Priyam	More...				about 13 years ago
copy example configuration file to user's home directory on the first run	Anurag Priyam	More...				about 13 years ago
Gemfile: read dependencies from the gemspec	Anurag Priyam	More...				about 13 years ago
blast: execute `blastn`, not `megablast`, when `blastn` is selected	Anurag Priyam	More...				about 13 years ago
remove namespace declaration	Anurag Priyam	More...				about 13 years ago
DOCTYPE html	Anurag Priyam	More...				about 13 years ago
fix HTML validation errors caused due to unquoted attribute values	Anurag Priyam	More...				about 13 years ago
ui: improve presentation of blast results [#10]	Anurag Priyam	More...				about 13 years ago
make hit coordinates available to custom hyperlink generator	Anurag Priyam	More...				about 13 years ago
All documentation now at sequenceserver.com	Yannick Wurm	More...				about 13 years ago
maint: move to Twitter's bootstrap toolkit [close #68] [close #39]	Anurag Priyam	More...				about 13 years ago
app: support databases formatted without `-parse_seqids` (fix #58)	Anurag Priyam	More...				over 13 years ago
get_sequence: notify user of extra sequences during retrieval (fix #58)	Anurag Priyam	More...				over 13 years ago
sequence_from_blastdb: raise TypeError if the argument's type is unexpected	Anurag Priyam	More...				over 13 years ago
get_sequence: suppress error output due to `blastdbcmd` (fix #41)	Anurag Priyam	More...				over 13 years ago
get_sequence: change logging info	Anurag Priyam	More...				over 13 years ago
get_sequence: remove redundant session info check	Anurag Priyam	More...				over 13 years ago
get_sequence: change URL style (#58)	Anurag Priyam	More...				over 13 years ago
config: load `config.yml` relative to app root (fix #64)	Anurag Priyam	More...				over 13 years ago
database_formatter: add verbose mode	Anurag Priyam	More...				over 13 years ago
database_formatter: add a help option (-h, --help)	Anurag Priyam	More...				over 13 years ago

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