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Commits
: Listings
Analyzed
12 days
ago. based on code collected
13 days
ago.
Jan 30, 2024 — Jan 30, 2025
Showing page 97 of 97
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Changing the folder of a couple of files...
Pierre Bellec
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almost 17 years ago
Many bug fix and improvements in the pipeline system, i.e. NIAK_INIT_PIPELINE, NIAK_MANAGE_PIPELINE and NIAK_VISU_PIPELINE. The function NIAK_DEMO_PIPELINE has been tested on the demo dataset to perform a number of per-processing using the available bricks. It worked fine both in local mode (on a single machine) or in cluster mode using the SGE qusb system at the BIC.
Pierre Bellec
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almost 17 years ago
mninor fixes in the global variables.
Pierre Bellec
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almost 17 years ago
addition of the functions NIAK_MANAGE_PIPELINE and NIAK_VISU_PIPELINE which allows to actually run and monitor pipelines. These functions are going to be tested and improved in the next days.
Pierre Bellec
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almost 17 years ago
Many bug fix in NIAK_INIT_PIPELINE.
Pierre Bellec
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almost 17 years ago
The pipeline system is getting there. The main function is NIAK_INIT_PIPELINE which generates PERL and BASH scripts ready to be fed into the Poor Man's Pipeline (PMP). There is a small (incomplete) demo of how to use that to actually process fMRI data : NIAK_DEMO_PIPELINE. A couple of minor new commands and bug fixes in existing bricks.
Pierre Bellec
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almost 17 years ago
Creation of a brick for spatial smoothing NIAK_BRICK_SMOOTH_VOL, based on the command NIAK_SMOOTH_VOL. There is also a small demo called NIAK_DEMO_SMOOTH_VOL.
Pierre Bellec
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almost 17 years ago
Correction of a small bug in NIAK_MONTAGE.
Pierre Bellec
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almost 17 years ago
A new brick (and demo) for temporal filtering of fMRI data.
Pierre Bellec
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almost 17 years ago
The nifti file format (as well as the ancestor analyze 7.5) are now supported by the reader/writer.
Pierre Bellec
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almost 17 years ago
New commands for temporal filtering using discrete cosine regression. Also some small functions for least-square linear fitting and mean/variance correction of time series.
Pierre Bellec
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almost 17 years ago
bug fix in the zero-padding of kernels for spatial smoothing.
Pierre Bellec
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almost 17 years ago
Optimization of memory usage when performing a 3D convolution.
Pierre Bellec
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almost 17 years ago
A few bug fix in the reader. Renamed a couple of folders/functions.
Pierre Bellec
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almost 17 years ago
Multipe bugs have been fixed in the minc reader/writer to deal properly with files in sagittal or coronal conventions. A couple of enhancements have been made too (see issues 2 and 5 on the NIAK project page).
Pierre Bellec
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almost 17 years ago
The reader/writer of minc files is functional and tested. An overlay independent of a specific file format has been created (NIAK_READ_VOL and NIAK_WRITE_VOL). This is to facilitate future integration of NIFTI and ANALYZE file formats.
Pierre Bellec
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about 17 years ago
I forgot the file in the last commit...
Pierre Bellec
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about 17 years ago
Addition of a function to perform slice timing correction. Temporal interpolation can be done usin either sync (SPM5-like) or linear interpolation.
Pierre Bellec
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about 17 years ago
Initial import. There are a couple of image processing commands (temporal filtering, "montage" viewer of volume). The minc reader works. There are also some functions to design a label hierachy in the pipeline system.
Pierre Bellec
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about 17 years ago
Initial directory structure.
no author
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about 17 years ago
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