Open Hub
Open Hub

 Settings |  Report Duplicate

4
I Use This!
Activity Not Available

Commits : Listings

Analyzed about 1 year ago. based on code collected about 1 year ago.
Jan 16, 2023 — Jan 16, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Changed to reflect removal of getMin() and getMax() from BioSeq interface.
gregghelt2
More... almost 20 years ago
Removed getMin() and getMax() methods from BioSeq interface. They have been pushed out to CompositeNegSeq class.
gregghelt2
More... almost 20 years ago
Experimenting with different ways of improving load time and memory footprint.
gregghelt2
More... almost 20 years ago
Changed main to test example from spec document.
gregghelt2
More... almost 20 years ago
Modified to replace ending "000" with kb in more modes.
gregghelt2
More... almost 20 years ago
Modified to assume no CDS if cdsMin and cdsMax are both < 0.
gregghelt2
More... almost 20 years ago
Now adding the match glyphs to the TierGlyph rather than directly to the NeoMap. Adding to the NeoMap could cause problems when tiers were moved around and even sometimes when vertical zooming was done.
Ed Erwin
as chyekk
More... almost 20 years ago
When loading a link.psl (NetAffx alignment) file, make a copy of the seqhash, so that all the temporary sequences inside the file do not get added as new sequences in the QuickLoad window.
Ed Erwin
as chyekk
More... almost 20 years ago
refining DAS/Genometry integration
gregghelt2
More... almost 20 years ago
Replacing Das2ClientAPI.zuml with GenometryWithDas.zuml
gregghelt2
More... almost 20 years ago
Replacing Das2ClientAPI.zuml UML modeling with GenometryWithDas.zuml (zipped up xmi file)
gregghelt2
More... almost 20 years ago
Repaired the links to the tutorials.
Ed Erwin
as chyekk
More... almost 20 years ago
Adding files used by the tutorials.
Ed Erwin
as chyekk
More... almost 20 years ago
Checking-in tutorial web pages.
Ed Erwin
as chyekk
More... almost 20 years ago
Adding the match glyphs directly to the map, not as children of the MRNA or Exon glyphs. The advantage is that this allows the match glyphs to remain visible at all zoom levels.
Ed Erwin
as chyekk
More... almost 20 years ago
Small optimization.
Ed Erwin
as chyekk
More... almost 20 years ago
Added text fields to track main view scale and visible bases, as well as directly setting scale.
gregghelt2
More... almost 20 years ago
Modifed so when getFeatures() method constructs overlap (and potentially inside) filter string, strand info is left off (want annotations from both strands).
gregghelt2
More... almost 20 years ago
Adding comments to indicate that Das2ContainerAnnot is not yet used, and in fact may be removed at some point.
gregghelt2
More... almost 20 years ago
Added DAS2 server at das.biopackages.net.
gregghelt2
More... almost 20 years ago
Changed getPositionString() method to take an additional argument for whether to append strand info.
gregghelt2
More... almost 20 years ago
Enhanced to exercise DAS2 feature queries.
gregghelt2
More... almost 20 years ago
Added getFeatures() method to do DAS2 feature queries.
gregghelt2
More... almost 20 years ago
Fleshing out Das2FeatureRequestSym.
gregghelt2
More... almost 20 years ago
Turning off some diagnostic output.
gregghelt2
More... almost 20 years ago
Modified getPositionString() to take an additional boolean argument specifying whether to add a "region/" header or not.
gregghelt2
More... almost 20 years ago
Added Das2FeatureRequestSym, a symmetry that contains information on DAS2 feature query and the features returned from the query.
gregghelt2
More... almost 20 years ago
Added Das2ContainerAnnot class, a subclass of TypeContainerAnnot, as part of bridge between DAS2 models and genometry.
gregghelt2
More... almost 20 years ago
Adding Das2LoadView a view to exercise DAS2 client implementation.
gregghelt2
More... almost 20 years ago
Adding SimpleDas2Feature symmetry class for annotations loaded from DAS2FEATURE XML.
gregghelt2
More... almost 20 years ago