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Analyzed 15 days ago. based on code collected 15 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 29, 2024 — Jan 29, 2025 Showing page 1 of 14 Search / Filter on:
Update README.md	Rutger Vos	More...				almost 11 years ago
renaming README to markdown extension	Rutger Vos as rvosa	More...				almost 11 years ago
Update README	Rutger Vos	More...				almost 11 years ago
added logging to warn of possible truncation	Rutger Vos	More...				over 12 years ago
adding genetrees target, which produces midpoint-rooted maximum likelihood trees	Rutger Vos	More...				over 12 years ago
adding midpoint rooted phyloxml gene trees	Rutger Vos	More...				over 12 years ago
Now does midpoint rooting instead of breaking basal trichotomy	Rutger Vos	More...				over 12 years ago
Updated to take into account that we now use the NCBI common tree where, if there are subspecies, the species becomes an internal node. We turn this internal node into a polytomous sibling of the subspecies.	Rutger Vos	More...				over 12 years ago
Updated to take into account that we now use the NCBI common tree where, if there are subspecies, the species becomes an internal node. We turn this internal node into a polytomous sibling of the subspecies.	Rutger Vos	More...				over 12 years ago
Updated to use logger	Rutger Vos	More...				over 12 years ago
removing old sequences	Rutger Vos	More...				over 12 years ago
removing phyml executables	Rutger Vos	More...				over 12 years ago
removing codeml executable	Rutger Vos	More...				over 12 years ago
set executable bits on linux paup	Rutger Vos	More...				over 12 years ago
re-organized make targets	Rutger Vos	More...				over 12 years ago
added w to table headers	Rutger Vos	More...				over 12 years ago
adding comphy powerpoint slides	Rutger Vos	More...				over 12 years ago
adding paml results table	Rutger Vos	More...				over 12 years ago
re-generated nexus files	Rutger Vos	More...				over 12 years ago
re-generated phyml constraint trees	Rutger Vos	More...				over 12 years ago
re-ran phyml and paml	Rutger Vos	More...				over 12 years ago
adding folders for binaries and 3rd party sources	Rutger Vos	More...				over 12 years ago
adding simple script to summarize paml output	Rutger Vos as rvosa	More...				over 12 years ago
added specieslist target, and new invocation of make_ratchet_commands to replace pauprat	Rutger Vos as rvosa	More...				over 12 years ago
added more logging messages	Rutger Vos as rvosa	More...				over 12 years ago
changed reference to old driver.sh into Makefile	Rutger Vos as rvosa	More...				over 12 years ago
re-generated MRP matrix and ratchet commands	Rutger Vos as rvosa	More...				over 12 years ago
downloaded new species tree from NCBI for taxa in specieslist.txt	Rutger Vos as rvosa	More...				over 12 years ago
adding script to replace pauprat	Rutger Vos as rvosa	More...				over 12 years ago
adding nexus files for python sequences	Rutger Vos as rvosa	More...				over 12 years ago

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