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Analyzed 12 months ago. based on code collected 12 months ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 18, 2023 — Jan 18, 2024 Showing page 286 of 297 Search / Filter on:
Issues #46 and #47 are fixed. PDBFetcher classes are removed. only fetchPDB function does all the work.	Ahmet Bakan	More...				over 13 years ago
Issue #49: completed. getBySerial and getBySerialRange are implemented for AtomGroup class.	Ahmet Bakan	More...				over 13 years ago
Issue #28: is completed.	Ahmet Bakan	More...				over 13 years ago
Issue #2: script routines can optionally write npz files. Further improvements to read NPZ files by script routines is not planned.	Ahmet Bakan	More...				over 13 years ago
Doc update.	Ahmet Bakan	More...				over 13 years ago
Code for selections using 'index' keyword is cleaned.	Ahmet Bakan	More...				over 13 years ago
Issue #48: calcADPs function is implemented.	Ahmet Bakan	More...				over 13 years ago
Issue #49: fixes in select.py module to make 'serial' keyword work properly.	Ahmet Bakan	More...				over 13 years ago
Issue #49: serial number data field is defined for atom groups. parsePDB is parsing serial numbers from PDB files and assigning them to atom groups. Selection keyword "serial" is changed to select atoms based on their serial numbers (parsed from the input file). Old definition of serial (index+1) is deprecated.	Ahmet Bakan	More...				over 13 years ago
A bugfix in NMWiz alignment function. Doc update.	Ahmet Bakan	More...				over 13 years ago
NMWiz version number is iterated.	Ahmet Bakan	More...				over 13 years ago
Issue #39 is closed. An interface to compare structures and generate deformation vector is implemented.	Ahmet Bakan	More...				over 13 years ago
Issue #27 is closed. Help is shown in a text viewer except for settings options. ANM Server interface is removed from main gui.	Ahmet Bakan	More...				over 13 years ago
NMWiz ProDy interface allows user to elect removal of coordinate file after job completion.	Ahmet Bakan	More...				over 13 years ago
parseDCD file is changed to read a single frame by setting last equal to first.	Ahmet Bakan	More...				over 13 years ago
PCA routine is changed to accept DCD files.	Ahmet Bakan	More...				over 13 years ago
NMWiz can output DCD files for PCA calculation.	Ahmet Bakan	More...				over 13 years ago
parseDCD prints number of frames and atoms.	Ahmet Bakan	More...				over 13 years ago
Autoload disabled in NMWiz.	Ahmet Bakan	More...				over 13 years ago
Updates before release v0.7.2	Ahmet Bakan	More...				over 13 years ago
Changes in parseDCD function.	Ahmet Bakan	More...				over 13 years ago
Issues #37 and #33 are completed.	Ahmet Bakan	More...				over 13 years ago
parseDCD is implemented in ensemble module, closing issue #42.	Ahmet Bakan	More...				over 13 years ago
Issue #36 is completed. Default selection in NMWiz ProDy interface is changed.	Ahmet Bakan	More...				over 13 years ago
Major classes can be instantiated without passing a name (close Issue #37). By default "Unnamed" ias passed as name argument.	Ahmet Bakan	More...				over 13 years ago
Copy method of atom pointer classes changed to accept selection strings to allow for copying a subset of atoms. This closes Issue #40.	Ahmet Bakan	More...				over 13 years ago
Problem in writeNMD function when writing a single mode reported in Issue #41 is resolved.	Ahmet Bakan	More...				over 13 years ago
PyPI code update.	Ahmet Bakan	More...				over 13 years ago
Doc update. Monthly stats are parsed.	Ahmet Bakan	More...				over 13 years ago
Doc update.	Ahmet Bakan	More...				over 13 years ago

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